HEADER GROWTH FACTOR/GROWTH FACTOR RECEPTOR 26-FEB-04 1SHY TITLE THE CRYSTAL STRUCTURE OF HGF BETA-CHAIN IN COMPLEX WITH THE SEMA TITLE 2 DOMAIN OF THE MET RECEPTOR. COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEPATOCYTE GROWTH FACTOR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HGF BETA CHAIN; COMPND 5 SYNONYM: SCATTER FACTOR, SF, HEPATOPOEITIN A; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: HEPATOCYTE GROWTH FACTOR RECEPTOR; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: MET RECEPTOR SEMA AND PSI DOMAIN; COMPND 12 SYNONYM: MET PROTO-ONCOGENE TYROSINE KINASE, C-MET, HGF RECEPTOR, COMPND 13 HGF-SF RECEPTOR; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HGF, HPTA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: MET; SOURCE 13 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 14 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 16 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS PROTEASE, SEMA DOMAIN, PSI DOMAIN, RECEPTOR ECTODOMAIN GROWTH FACTOR, KEYWDS 2 GROWTH FACTOR-GROWTH FACTOR RECEPTOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.STAMOS,C.WIESMANN REVDAT 5 27-OCT-21 1SHY 1 SEQADV REVDAT 4 13-JUL-11 1SHY 1 VERSN REVDAT 3 24-FEB-09 1SHY 1 VERSN REVDAT 2 22-JUN-04 1SHY 1 JRNL REVDAT 1 15-JUN-04 1SHY 0 JRNL AUTH J.STAMOS,R.A.LAZARUS,X.YAO,D.KIRCHHOFER,C.WIESMANN JRNL TITL CRYSTAL STRUCTURE OF THE HGF BETA-CHAIN IN COMPLEX WITH THE JRNL TITL 2 SEMA DOMAIN OF THE MET RECEPTOR. JRNL REF EMBO J. V. 23 2325 2004 JRNL REFN ISSN 0261-4189 JRNL PMID 15167892 JRNL DOI 10.1038/SJ.EMBOJ.7600243 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.KIRCHHOFER,Y.XIAOYI,M.PEEK,C.EIGENBROT,M.T.LIPARI, REMARK 1 AUTH 2 K.L.BILLECI,H.R.MAUN,P.MORAN,L.SANTELL,R.A.LAZARUS REMARK 1 TITL STRUCTURAL AND FUNCTIONAL BASIS OF THE SERINE PROTEASE-LIKE REMARK 1 TITL 2 HGF B-CHAIN IN MET BINDING AND SIGNALING REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN REMARK 2 REMARK 2 RESOLUTION. 3.22 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.22 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 26830 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1417 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 25 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.22 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.28 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1448 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3270 REMARK 3 BIN FREE R VALUE SET COUNT : 69 REMARK 3 BIN FREE R VALUE : 0.3500 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5735 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.22000 REMARK 3 B22 (A**2) : -2.24000 REMARK 3 B33 (A**2) : 0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.830 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.409 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.297 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 17.302 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.922 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.889 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5883 ; 0.012 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7991 ; 1.537 ; 1.942 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 722 ; 8.567 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 878 ; 0.120 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4482 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2571 ; 0.246 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 179 ; 0.150 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 31 ; 0.186 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 3 ; 0.325 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3617 ; 3.731 ; 2.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5869 ; 6.377 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2266 ; 3.680 ; 2.500 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2122 ; 6.016 ; 5.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 495 A 722 REMARK 3 RESIDUE RANGE : B 40 B 530 REMARK 3 RESIDUE RANGE : B 531 B 564 REMARK 3 ORIGIN FOR THE GROUP (A): -6.9404 29.4231 39.4854 REMARK 3 T TENSOR REMARK 3 T11: 0.3008 T22: 0.2576 REMARK 3 T33: 0.1623 T12: 0.0090 REMARK 3 T13: -0.1689 T23: 0.1267 REMARK 3 L TENSOR REMARK 3 L11: 2.9671 L22: 3.7827 REMARK 3 L33: 1.8934 L12: -1.7139 REMARK 3 L13: -1.1851 L23: 1.1785 REMARK 3 S TENSOR REMARK 3 S11: -0.4129 S12: -0.2747 S13: 0.2640 REMARK 3 S21: 0.2786 S22: 0.4647 S23: 0.0770 REMARK 3 S31: -0.3013 S32: 0.1519 S33: -0.0517 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1SHY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-MAR-04. REMARK 100 THE DEPOSITION ID IS D_1000021721. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-SEP-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.928 REMARK 200 MONOCHROMATOR : MONOCHROMATOR CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28312 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05800 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.58600 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: HGF BETA CHAIN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 74.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG, PH 8, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 68.52600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 93.17600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 68.52600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 93.17600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TYR A 723 REMARK 465 LYS A 724 REMARK 465 VAL A 725 REMARK 465 PRO A 726 REMARK 465 GLN A 727 REMARK 465 SER A 728 REMARK 465 GLU B 25 REMARK 465 CYS B 26 REMARK 465 LYS B 27 REMARK 465 GLU B 28 REMARK 465 ALA B 29 REMARK 465 LEU B 30 REMARK 465 ALA B 31 REMARK 465 LYS B 32 REMARK 465 SER B 33 REMARK 465 GLU B 34 REMARK 465 MET B 35 REMARK 465 ASN B 36 REMARK 465 VAL B 37 REMARK 465 ASN B 38 REMARK 465 MET B 39 REMARK 465 GLU B 302 REMARK 465 LEU B 303 REMARK 465 VAL B 304 REMARK 465 PRO B 305 REMARK 465 ARG B 306 REMARK 465 GLY B 307 REMARK 465 SER B 308 REMARK 465 THR B 309 REMARK 465 LYS B 310 REMARK 465 VAL B 378 REMARK 465 ASN B 379 REMARK 465 LYS B 380 REMARK 465 ASN B 381 REMARK 465 THR B 401 REMARK 465 LEU B 402 REMARK 465 LEU B 403 REMARK 465 ARG B 404 REMARK 465 ASN B 405 REMARK 465 SER B 406 REMARK 465 SER B 407 REMARK 465 GLY B 408 REMARK 465 CYS B 409 REMARK 465 GLU B 410 REMARK 465 ALA B 411 REMARK 465 ARG B 412 REMARK 465 ARG B 413 REMARK 465 ILE B 565 REMARK 465 TYR B 566 REMARK 465 LYS B 567 REMARK 465 HIS B 568 REMARK 465 HIS B 569 REMARK 465 HIS B 570 REMARK 465 HIS B 571 REMARK 465 HIS B 572 REMARK 465 HIS B 573 REMARK 465 HIS B 574 REMARK 465 HIS B 575 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE B 377 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 558 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP B 100 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP B 128 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP B 358 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP B 543 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 514 51.63 35.14 REMARK 500 ASN A 515 -26.09 80.58 REMARK 500 GLN A 534 8.57 -55.72 REMARK 500 VAL A 553 -32.57 -37.15 REMARK 500 ASP A 558 72.68 -115.69 REMARK 500 PRO A 574 153.52 -35.93 REMARK 500 ARG A 586 132.38 120.02 REMARK 500 ASP A 591 -146.71 -88.87 REMARK 500 SER A 604 151.66 -43.75 REMARK 500 ARG A 647 78.76 42.15 REMARK 500 LYS A 663 -4.35 69.06 REMARK 500 CYS A 669 -166.09 -165.08 REMARK 500 GLN A 681 -70.89 -143.20 REMARK 500 LYS A 683 -53.93 -164.87 REMARK 500 ALA A 698 53.18 29.76 REMARK 500 GLU B 59 58.58 36.94 REMARK 500 LYS B 104 10.19 -150.88 REMARK 500 LEU B 107 128.35 62.31 REMARK 500 ASN B 137 59.35 -97.71 REMARK 500 ASN B 149 -48.22 -149.46 REMARK 500 SER B 204 80.59 -59.73 REMARK 500 TYR B 205 94.81 -46.74 REMARK 500 ARG B 242 -19.82 -45.36 REMARK 500 SER B 244 -70.85 -19.17 REMARK 500 ASN B 257 7.26 85.51 REMARK 500 GLN B 265 124.74 -174.41 REMARK 500 ARG B 266 85.67 32.64 REMARK 500 ASP B 270 26.73 29.84 REMARK 500 ALA B 271 67.50 -109.18 REMARK 500 GLN B 272 -64.34 38.22 REMARK 500 HIS B 275 140.11 177.02 REMARK 500 HIS B 289 -74.43 -103.91 REMARK 500 ALA B 330 -72.12 -51.65 REMARK 500 ARG B 331 -50.13 -27.59 REMARK 500 ALA B 335 -153.02 66.63 REMARK 500 SER B 336 93.17 79.34 REMARK 500 LEU B 337 -34.38 -39.74 REMARK 500 ASN B 338 51.29 -113.63 REMARK 500 ASP B 358 45.50 -77.54 REMARK 500 LEU B 386 87.79 -66.31 REMARK 500 HIS B 394 171.94 65.62 REMARK 500 GLU B 395 175.16 -51.35 REMARK 500 HIS B 396 -47.81 68.11 REMARK 500 PHE B 398 48.81 -108.37 REMARK 500 ASN B 399 -110.81 -134.91 REMARK 500 GLN B 433 -24.38 -39.69 REMARK 500 PRO B 472 51.73 -98.05 REMARK 500 ASN B 478 119.20 -160.83 REMARK 500 SER B 483 -21.97 -32.34 REMARK 500 ASN B 497 17.01 83.63 REMARK 500 REMARK 500 THIS ENTRY HAS 58 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER B 135 VAL B 136 -145.51 REMARK 500 SER B 244 TYR B 245 143.99 REMARK 500 GLN B 265 ARG B 266 149.91 REMARK 500 PHE B 274 HIS B 275 -133.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR PROVIDED REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR PROVIDED REMARK 999 REMARK 999 SEQUENCE REMARK 999 IN CHAIN B, THE FURIN CLEAVAGE SITE WAS REPLACED REMARK 999 WITH A THROMBIN CLEAVAGE SITE. DBREF 1SHY A 495 728 UNP P14210 HGF_HUMAN 495 728 DBREF 1SHY B 25 567 UNP P08581 MET_HUMAN 25 567 SEQADV 1SHY SER A 604 UNP P14210 CYS 604 ENGINEERED MUTATION SEQADV 1SHY LEU B 303 UNP P08581 LYS 303 SEE REMARK 999 SEQADV 1SHY VAL B 304 UNP P08581 ARG 304 SEE REMARK 999 SEQADV 1SHY PRO B 305 UNP P08581 LYS 305 SEE REMARK 999 SEQADV 1SHY ARG B 306 UNP P08581 LYS 306 SEE REMARK 999 SEQADV 1SHY GLY B 307 UNP P08581 ARG 307 SEE REMARK 999 SEQADV 1SHY HIS B 568 UNP P08581 EXPRESSION TAG SEQADV 1SHY HIS B 569 UNP P08581 EXPRESSION TAG SEQADV 1SHY HIS B 570 UNP P08581 EXPRESSION TAG SEQADV 1SHY HIS B 571 UNP P08581 EXPRESSION TAG SEQADV 1SHY HIS B 572 UNP P08581 EXPRESSION TAG SEQADV 1SHY HIS B 573 UNP P08581 EXPRESSION TAG SEQADV 1SHY HIS B 574 UNP P08581 EXPRESSION TAG SEQADV 1SHY HIS B 575 UNP P08581 EXPRESSION TAG SEQRES 1 A 234 VAL VAL ASN GLY ILE PRO THR ARG THR ASN ILE GLY TRP SEQRES 2 A 234 MET VAL SER LEU ARG TYR ARG ASN LYS HIS ILE CYS GLY SEQRES 3 A 234 GLY SER LEU ILE LYS GLU SER TRP VAL LEU THR ALA ARG SEQRES 4 A 234 GLN CYS PHE PRO SER ARG ASP LEU LYS ASP TYR GLU ALA SEQRES 5 A 234 TRP LEU GLY ILE HIS ASP VAL HIS GLY ARG GLY ASP GLU SEQRES 6 A 234 LYS CYS LYS GLN VAL LEU ASN VAL SER GLN LEU VAL TYR SEQRES 7 A 234 GLY PRO GLU GLY SER ASP LEU VAL LEU MET LYS LEU ALA SEQRES 8 A 234 ARG PRO ALA VAL LEU ASP ASP PHE VAL SER THR ILE ASP SEQRES 9 A 234 LEU PRO ASN TYR GLY SER THR ILE PRO GLU LYS THR SER SEQRES 10 A 234 CYS SER VAL TYR GLY TRP GLY TYR THR GLY LEU ILE ASN SEQRES 11 A 234 TYR ASP GLY LEU LEU ARG VAL ALA HIS LEU TYR ILE MET SEQRES 12 A 234 GLY ASN GLU LYS CYS SER GLN HIS HIS ARG GLY LYS VAL SEQRES 13 A 234 THR LEU ASN GLU SER GLU ILE CYS ALA GLY ALA GLU LYS SEQRES 14 A 234 ILE GLY SER GLY PRO CYS GLU GLY ASP TYR GLY GLY PRO SEQRES 15 A 234 LEU VAL CYS GLU GLN HIS LYS MET ARG MET VAL LEU GLY SEQRES 16 A 234 VAL ILE VAL PRO GLY ARG GLY CYS ALA ILE PRO ASN ARG SEQRES 17 A 234 PRO GLY ILE PHE VAL ARG VAL ALA TYR TYR ALA LYS TRP SEQRES 18 A 234 ILE HIS LYS ILE ILE LEU THR TYR LYS VAL PRO GLN SER SEQRES 1 B 551 GLU CYS LYS GLU ALA LEU ALA LYS SER GLU MET ASN VAL SEQRES 2 B 551 ASN MET LYS TYR GLN LEU PRO ASN PHE THR ALA GLU THR SEQRES 3 B 551 PRO ILE GLN ASN VAL ILE LEU HIS GLU HIS HIS ILE PHE SEQRES 4 B 551 LEU GLY ALA THR ASN TYR ILE TYR VAL LEU ASN GLU GLU SEQRES 5 B 551 ASP LEU GLN LYS VAL ALA GLU TYR LYS THR GLY PRO VAL SEQRES 6 B 551 LEU GLU HIS PRO ASP CYS PHE PRO CYS GLN ASP CYS SER SEQRES 7 B 551 SER LYS ALA ASN LEU SER GLY GLY VAL TRP LYS ASP ASN SEQRES 8 B 551 ILE ASN MET ALA LEU VAL VAL ASP THR TYR TYR ASP ASP SEQRES 9 B 551 GLN LEU ILE SER CYS GLY SER VAL ASN ARG GLY THR CYS SEQRES 10 B 551 GLN ARG HIS VAL PHE PRO HIS ASN HIS THR ALA ASP ILE SEQRES 11 B 551 GLN SER GLU VAL HIS CYS ILE PHE SER PRO GLN ILE GLU SEQRES 12 B 551 GLU PRO SER GLN CYS PRO ASP CYS VAL VAL SER ALA LEU SEQRES 13 B 551 GLY ALA LYS VAL LEU SER SER VAL LYS ASP ARG PHE ILE SEQRES 14 B 551 ASN PHE PHE VAL GLY ASN THR ILE ASN SER SER TYR PHE SEQRES 15 B 551 PRO ASP HIS PRO LEU HIS SER ILE SER VAL ARG ARG LEU SEQRES 16 B 551 LYS GLU THR LYS ASP GLY PHE MET PHE LEU THR ASP GLN SEQRES 17 B 551 SER TYR ILE ASP VAL LEU PRO GLU PHE ARG ASP SER TYR SEQRES 18 B 551 PRO ILE LYS TYR VAL HIS ALA PHE GLU SER ASN ASN PHE SEQRES 19 B 551 ILE TYR PHE LEU THR VAL GLN ARG GLU THR LEU ASP ALA SEQRES 20 B 551 GLN THR PHE HIS THR ARG ILE ILE ARG PHE CYS SER ILE SEQRES 21 B 551 ASN SER GLY LEU HIS SER TYR MET GLU MET PRO LEU GLU SEQRES 22 B 551 CYS ILE LEU THR GLU LEU VAL PRO ARG GLY SER THR LYS SEQRES 23 B 551 LYS GLU VAL PHE ASN ILE LEU GLN ALA ALA TYR VAL SER SEQRES 24 B 551 LYS PRO GLY ALA GLN LEU ALA ARG GLN ILE GLY ALA SER SEQRES 25 B 551 LEU ASN ASP ASP ILE LEU PHE GLY VAL PHE ALA GLN SER SEQRES 26 B 551 LYS PRO ASP SER ALA GLU PRO MET ASP ARG SER ALA MET SEQRES 27 B 551 CYS ALA PHE PRO ILE LYS TYR VAL ASN ASP PHE PHE ASN SEQRES 28 B 551 LYS ILE VAL ASN LYS ASN ASN VAL ARG CYS LEU GLN HIS SEQRES 29 B 551 PHE TYR GLY PRO ASN HIS GLU HIS CYS PHE ASN ARG THR SEQRES 30 B 551 LEU LEU ARG ASN SER SER GLY CYS GLU ALA ARG ARG ASP SEQRES 31 B 551 GLU TYR ARG THR GLU PHE THR THR ALA LEU GLN ARG VAL SEQRES 32 B 551 ASP LEU PHE MET GLY GLN PHE SER GLU VAL LEU LEU THR SEQRES 33 B 551 SER ILE SER THR PHE ILE LYS GLY ASP LEU THR ILE ALA SEQRES 34 B 551 ASN LEU GLY THR SER GLU GLY ARG PHE MET GLN VAL VAL SEQRES 35 B 551 VAL SER ARG SER GLY PRO SER THR PRO HIS VAL ASN PHE SEQRES 36 B 551 LEU LEU ASP SER HIS PRO VAL SER PRO GLU VAL ILE VAL SEQRES 37 B 551 GLU HIS THR LEU ASN GLN ASN GLY TYR THR LEU VAL ILE SEQRES 38 B 551 THR GLY LYS LYS ILE THR LYS ILE PRO LEU ASN GLY LEU SEQRES 39 B 551 GLY CYS ARG HIS PHE GLN SER CYS SER GLN CYS LEU SER SEQRES 40 B 551 ALA PRO PRO PHE VAL GLN CYS GLY TRP CYS HIS ASP LYS SEQRES 41 B 551 CYS VAL ARG SER GLU GLU CYS LEU SER GLY THR TRP THR SEQRES 42 B 551 GLN GLN ILE CYS LEU PRO ALA ILE TYR LYS HIS HIS HIS SEQRES 43 B 551 HIS HIS HIS HIS HIS HELIX 1 1 GLN A 534 PHE A 536 5 3 HELIX 2 2 ASP A 540 LYS A 542 5 3 HELIX 3 3 GLY A 638 HIS A 646 1 9 HELIX 4 4 TYR A 712 LEU A 721 1 10 HELIX 5 5 THR B 230 GLN B 232 5 3 HELIX 6 6 GLU B 240 TYR B 245 1 6 HELIX 7 7 GLY B 326 ILE B 333 1 8 HELIX 8 8 ILE B 367 LYS B 376 1 10 HELIX 9 9 ASN B 516 ARG B 521 5 6 HELIX 10 10 SER B 525 SER B 531 1 7 HELIX 11 11 ALA B 532 ALA B 532 5 1 HELIX 12 12 PRO B 533 GLN B 537 5 5 HELIX 13 13 ARG B 547 CYS B 551 5 5 SHEET 1 A 8 ILE A 499 PRO A 500 0 SHEET 2 A 8 ARG A 630 MET A 637 -1 O VAL A 631 N ILE A 499 SHEET 3 A 8 GLU A 656 GLY A 660 -1 O GLY A 660 N TYR A 635 SHEET 4 A 8 GLY A 704 ARG A 708 -1 O PHE A 706 N ILE A 657 SHEET 5 A 8 ARG A 685 VAL A 690 -1 N VAL A 690 O VAL A 707 SHEET 6 A 8 PRO A 676 GLU A 680 -1 N LEU A 677 O GLY A 689 SHEET 7 A 8 SER A 611 GLY A 616 -1 N SER A 613 O VAL A 678 SHEET 8 A 8 ARG A 630 MET A 637 -1 O LEU A 634 N CYS A 612 SHEET 1 B 7 GLN A 563 LEU A 565 0 SHEET 2 B 7 TYR A 544 LEU A 548 -1 N ALA A 546 O LEU A 565 SHEET 3 B 7 MET A 508 TYR A 513 -1 N ARG A 512 O GLU A 545 SHEET 4 B 7 LYS A 516 LYS A 525 -1 O CYS A 519 N LEU A 511 SHEET 5 B 7 TRP A 528 ALA A 532 -1 O TRP A 528 N LYS A 525 SHEET 6 B 7 LEU A 579 LEU A 584 -1 O MET A 582 N VAL A 529 SHEET 7 B 7 VAL A 567 TYR A 572 -1 N VAL A 571 O LEU A 581 SHEET 1 C 4 ASN B 45 THR B 47 0 SHEET 2 C 4 LYS B 509 PRO B 514 -1 O ILE B 510 N PHE B 46 SHEET 3 C 4 ASN B 499 THR B 506 -1 N THR B 502 O ILE B 513 SHEET 4 C 4 VAL B 486 THR B 495 -1 N SER B 487 O ILE B 505 SHEET 1 D 4 ILE B 52 HIS B 58 0 SHEET 2 D 4 HIS B 61 ALA B 66 -1 O GLY B 65 N ASN B 54 SHEET 3 D 4 TYR B 69 ASN B 74 -1 O TYR B 69 N ALA B 66 SHEET 4 D 4 LYS B 80 LYS B 85 -1 O VAL B 81 N VAL B 72 SHEET 1 E 2 VAL B 89 GLU B 91 0 SHEET 2 E 2 VAL B 111 LYS B 113 -1 O LYS B 113 N VAL B 89 SHEET 1 F 4 ASN B 117 ASP B 123 0 SHEET 2 F 4 GLN B 129 GLY B 134 -1 O ILE B 131 N VAL B 121 SHEET 3 F 4 CYS B 141 VAL B 145 -1 O HIS B 144 N LEU B 130 SHEET 4 F 4 VAL B 158 CYS B 160 -1 O HIS B 159 N ARG B 143 SHEET 1 G 4 ALA B 182 LYS B 189 0 SHEET 2 G 4 PHE B 192 ASN B 199 -1 O PHE B 196 N LEU B 185 SHEET 3 G 4 ILE B 214 LEU B 219 -1 O ARG B 217 N PHE B 195 SHEET 4 G 4 PHE B 226 MET B 227 -1 O MET B 227 N ARG B 218 SHEET 1 H 4 ALA B 182 LYS B 189 0 SHEET 2 H 4 PHE B 192 ASN B 199 -1 O PHE B 196 N LEU B 185 SHEET 3 H 4 ILE B 214 LEU B 219 -1 O ARG B 217 N PHE B 195 SHEET 4 H 4 TYR B 234 ILE B 235 -1 O ILE B 235 N ILE B 214 SHEET 1 I 5 LYS B 248 SER B 255 0 SHEET 2 I 5 PHE B 258 VAL B 264 -1 O LEU B 262 N HIS B 251 SHEET 3 I 5 THR B 276 CYS B 282 -1 O ILE B 279 N PHE B 261 SHEET 4 I 5 MET B 292 ILE B 299 -1 O MET B 294 N ILE B 278 SHEET 5 I 5 THR B 418 GLU B 419 1 O THR B 418 N GLU B 293 SHEET 1 J 5 LYS B 248 SER B 255 0 SHEET 2 J 5 PHE B 258 VAL B 264 -1 O LEU B 262 N HIS B 251 SHEET 3 J 5 THR B 276 CYS B 282 -1 O ILE B 279 N PHE B 261 SHEET 4 J 5 MET B 292 ILE B 299 -1 O MET B 294 N ILE B 278 SHEET 5 J 5 LEU B 424 VAL B 427 1 O LEU B 424 N GLU B 297 SHEET 1 K 3 ALA B 319 SER B 323 0 SHEET 2 K 3 ILE B 341 SER B 349 -1 O ILE B 341 N SER B 323 SHEET 3 K 3 PRO B 356 PRO B 366 -1 O PHE B 365 N LEU B 342 SHEET 1 L 4 LEU B 439 LYS B 447 0 SHEET 2 L 4 LEU B 450 THR B 457 -1 O ILE B 452 N PHE B 445 SHEET 3 L 4 ARG B 461 VAL B 466 -1 O MET B 463 N LEU B 455 SHEET 4 L 4 PHE B 479 LEU B 480 -1 O PHE B 479 N PHE B 462 SHEET 1 M 2 GLY B 539 CYS B 541 0 SHEET 2 M 2 LYS B 544 VAL B 546 -1 O VAL B 546 N GLY B 539 SSBOND 1 CYS A 519 CYS A 535 1555 1555 2.03 SSBOND 2 CYS A 612 CYS A 679 1555 1555 2.04 SSBOND 3 CYS A 642 CYS A 658 1555 1555 2.03 SSBOND 4 CYS A 669 CYS A 697 1555 1555 2.06 SSBOND 5 CYS B 95 CYS B 101 1555 1555 2.03 SSBOND 6 CYS B 98 CYS B 160 1555 1555 2.04 SSBOND 7 CYS B 133 CYS B 141 1555 1555 2.01 SSBOND 8 CYS B 172 CYS B 175 1555 1555 2.04 SSBOND 9 CYS B 298 CYS B 363 1555 1555 2.04 SSBOND 10 CYS B 385 CYS B 397 1555 1555 2.03 SSBOND 11 CYS B 520 CYS B 538 1555 1555 2.03 SSBOND 12 CYS B 526 CYS B 561 1555 1555 2.07 SSBOND 13 CYS B 529 CYS B 545 1555 1555 2.02 SSBOND 14 CYS B 541 CYS B 551 1555 1555 2.04 CRYST1 137.052 186.352 66.659 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007297 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005366 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015002 0.00000