HEADER HYDROLASE 06-JAN-03 1NL1 TITLE BOVINE PROTHROMBIN FRAGMENT 1 IN COMPLEX WITH CALCIUM ION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTHROMBIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: FRAGMENT 1 (RESIDUES 1-156); COMPND 5 EC: 3.4.21.5 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: CATTLE; SOURCE 4 ORGANISM_TAXID: 9913 KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.HUANG,G.HUANG,B.FURIE,B.SEATON,B.C.FURIE REVDAT 5 16-AUG-23 1NL1 1 HETSYN REVDAT 4 29-JUL-20 1NL1 1 COMPND REMARK SEQADV HETNAM REVDAT 4 2 1 LINK SITE ATOM REVDAT 3 13-JUL-11 1NL1 1 VERSN REVDAT 2 24-FEB-09 1NL1 1 VERSN REVDAT 1 16-SEP-03 1NL1 0 JRNL AUTH M.HUANG,A.C.RIGBY,X.MORELLI,M.A.GRANT,G.HUANG,B.FURIE, JRNL AUTH 2 B.SEATON,B.C.FURIE JRNL TITL STRUCTURAL BASIS OF MEMBRANE BINDING BY GLA DOMAINS OF JRNL TITL 2 VITAMIN K-DEPENDENT PROTEINS. JRNL REF NAT.STRUCT.BIOL. V. 10 751 2003 JRNL REFN ISSN 1072-8368 JRNL PMID 12923575 JRNL DOI 10.1038/NSB971 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 0.9 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 434107.140 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.0 REMARK 3 NUMBER OF REFLECTIONS : 20891 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2058 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.02 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2806 REMARK 3 BIN R VALUE (WORKING SET) : 0.2810 REMARK 3 BIN FREE R VALUE : 0.3150 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.60 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 297 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.018 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1182 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 49 REMARK 3 SOLVENT ATOMS : 159 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.77000 REMARK 3 B22 (A**2) : -1.81000 REMARK 3 B33 (A**2) : -2.95000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.27 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.21 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.019 REMARK 3 BOND ANGLES (DEGREES) : 2.200 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.90 REMARK 3 IMPROPER ANGLES (DEGREES) : 3.190 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 0.870 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.490 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.220 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.000 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.36 REMARK 3 BSOL : 48.94 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : PT.PAR REMARK 3 PARAMETER FILE 3 : CARBOHYDRATE.PARAM REMARK 3 PARAMETER FILE 4 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 5 : ION.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1NL1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-FEB-03. REMARK 100 THE DEPOSITION ID IS D_1000017966. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 7.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X12C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21658 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 32.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.37900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 2PF2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 7.6 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.59400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.08650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.72150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.08650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.59400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 26.72150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PHE A 5 O HOH A 357 2.05 REMARK 500 OD1 ASP A 109 NH1 ARG A 111 2.06 REMARK 500 OG SER A 50 O HOH A 470 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 16 NE - CZ - NH1 ANGL. DEV. = 6.3 DEGREES REMARK 500 ARG A 16 NE - CZ - NH2 ANGL. DEV. = -7.0 DEGREES REMARK 500 ARG A 111 NE - CZ - NH1 ANGL. DEV. = -4.4 DEGREES REMARK 500 ARG A 116 CD - NE - CZ ANGL. DEV. = 9.9 DEGREES REMARK 500 ARG A 116 NE - CZ - NH1 ANGL. DEV. = 7.7 DEGREES REMARK 500 ARG A 116 NE - CZ - NH2 ANGL. DEV. = -8.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 3 65.78 -156.48 REMARK 500 PHE A 5 -116.51 -148.21 REMARK 500 PHE A 5 74.25 -159.47 REMARK 500 LEU A 6 13.83 99.75 REMARK 500 GLU A 112 -125.40 39.64 REMARK 500 GLN A 146 -90.19 -41.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 204 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 1 O REMARK 620 2 ASN A 2 OD1 74.9 REMARK 620 3 CGU A 7 OE11 64.8 94.3 REMARK 620 4 CGU A 8 OE22 132.5 78.6 79.0 REMARK 620 5 CGU A 17 OE21 60.8 135.1 74.4 137.6 REMARK 620 6 CGU A 17 OE11 133.8 151.2 99.8 79.6 73.2 REMARK 620 7 CGU A 27 OE11 142.5 84.9 149.6 71.1 126.0 70.3 REMARK 620 8 CGU A 27 OE22 71.2 79.5 135.5 140.3 79.5 106.4 74.3 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 205 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 1 O REMARK 620 2 CGU A 7 OE12 73.2 REMARK 620 3 CGU A 7 OE11 71.9 50.6 REMARK 620 4 CGU A 17 OE21 68.2 117.6 71.5 REMARK 620 5 CGU A 17 OE22 118.4 121.4 77.2 51.6 REMARK 620 6 CGU A 21 OE21 125.7 135.5 161.1 106.9 87.1 REMARK 620 7 CGU A 21 OE22 79.8 143.8 139.9 71.9 92.5 50.1 REMARK 620 8 HOH A 459 O 147.4 74.4 90.1 132.4 82.0 77.2 127.3 REMARK 620 9 HOH A 463 O 88.6 72.0 122.4 148.7 151.8 69.1 83.9 78.2 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CGU A 8 OE12 REMARK 620 2 CGU A 8 OE21 77.5 REMARK 620 3 CGU A 27 OE12 89.7 96.1 REMARK 620 4 CGU A 30 OE21 148.5 74.7 79.1 REMARK 620 5 CGU A 30 OE22 156.8 118.3 104.4 54.1 REMARK 620 6 HOH A 456 O 97.0 83.0 172.9 93.9 70.2 REMARK 620 7 HOH A 457 O 82.5 159.8 85.7 125.2 80.3 97.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 203 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CGU A 8 OE21 REMARK 620 2 CGU A 8 OE22 49.4 REMARK 620 3 CGU A 17 OE11 116.2 66.9 REMARK 620 4 CGU A 27 OE11 81.7 63.2 71.4 REMARK 620 5 CGU A 30 OE21 76.9 114.9 143.0 77.2 REMARK 620 6 HOH A 313 O 161.2 141.1 77.5 91.6 84.6 REMARK 620 7 HOH A 333 O 91.8 72.8 64.7 126.8 152.2 106.1 REMARK 620 8 HOH A 455 O 84.2 122.8 137.4 151.2 75.2 93.8 78.5 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CGU A 15 OE21 REMARK 620 2 CGU A 15 OE22 52.8 REMARK 620 3 CGU A 26 OE12 143.8 162.2 REMARK 620 4 CGU A 26 OE21 124.7 84.0 79.0 REMARK 620 5 CGU A 30 OE11 75.2 97.8 94.7 152.5 REMARK 620 6 CGU A 30 OE22 122.1 81.6 88.5 74.7 78.4 REMARK 620 7 HOH A 394 O 79.5 132.1 64.4 127.4 70.6 136.0 REMARK 620 8 HOH A 458 O 74.1 89.3 90.9 72.5 134.8 146.7 71.7 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 207 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CGU A 15 OE21 REMARK 620 2 CGU A 15 OE12 84.5 REMARK 620 3 CGU A 20 OE21 161.5 84.8 REMARK 620 4 CGU A 20 OE11 81.6 97.4 84.8 REMARK 620 5 HOH A 443 O 141.7 105.4 56.2 131.6 REMARK 620 6 HOH A 469 O 90.7 88.3 104.0 169.9 53.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 206 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CGU A 21 OE12 REMARK 620 2 CGU A 21 OE21 76.6 REMARK 620 3 HOH A 460 O 140.1 70.8 REMARK 620 4 HOH A 461 O 146.3 136.8 70.8 REMARK 620 5 HOH A 462 O 80.3 88.3 76.6 101.2 REMARK 620 6 HOH A 464 O 100.1 76.6 94.1 87.2 164.4 REMARK 620 7 HOH A 465 O 79.9 147.3 138.6 67.8 109.8 85.5 REMARK 620 N 1 2 3 4 5 6 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2PF2 RELATED DB: PDB REMARK 900 PROTHROMBIN FRAGMENT I DBREF 1NL1 A 1 147 UNP P00735 THRB_BOVIN 44 190 SEQADV 1NL1 CGU A 7 UNP P00735 GLU 50 MODIFIED RESIDUE SEQADV 1NL1 CGU A 8 UNP P00735 GLU 51 MODIFIED RESIDUE SEQADV 1NL1 CGU A 15 UNP P00735 GLU 58 MODIFIED RESIDUE SEQADV 1NL1 CGU A 17 UNP P00735 GLU 60 MODIFIED RESIDUE SEQADV 1NL1 CGU A 20 UNP P00735 GLU 63 MODIFIED RESIDUE SEQADV 1NL1 CGU A 21 UNP P00735 GLU 64 MODIFIED RESIDUE SEQADV 1NL1 CGU A 26 UNP P00735 GLU 69 MODIFIED RESIDUE SEQADV 1NL1 CGU A 27 UNP P00735 GLU 70 MODIFIED RESIDUE SEQADV 1NL1 CGU A 30 UNP P00735 GLU 73 MODIFIED RESIDUE SEQADV 1NL1 CGU A 33 UNP P00735 GLU 76 MODIFIED RESIDUE SEQRES 1 A 147 ALA ASN LYS GLY PHE LEU CGU CGU VAL ARG LYS GLY ASN SEQRES 2 A 147 LEU CGU ARG CGU CYS LEU CGU CGU PRO CYS SER ARG CGU SEQRES 3 A 147 CGU ALA PHE CGU ALA LEU CGU SER LEU SER ALA THR ASP SEQRES 4 A 147 ALA PHE TRP ALA LYS TYR THR ALA CYS GLU SER ALA ARG SEQRES 5 A 147 ASN PRO ARG GLU LYS LEU ASN GLU CYS LEU GLU GLY ASN SEQRES 6 A 147 CYS ALA GLU GLY VAL GLY MET ASN TYR ARG GLY ASN VAL SEQRES 7 A 147 SER VAL THR ARG SER GLY ILE GLU CYS GLN LEU TRP ARG SEQRES 8 A 147 SER ARG TYR PRO HIS LYS PRO GLU ILE ASN SER THR THR SEQRES 9 A 147 HIS PRO GLY ALA ASP LEU ARG GLU ASN PHE CYS ARG ASN SEQRES 10 A 147 PRO ASP GLY SER ILE THR GLY PRO TRP CYS TYR THR THR SEQRES 11 A 147 SER PRO THR LEU ARG ARG GLU GLU CYS SER VAL PRO VAL SEQRES 12 A 147 CYS GLY GLN ASP MODRES 1NL1 ASN A 77 ASN GLYCOSYLATION SITE MODRES 1NL1 ASN A 101 ASN GLYCOSYLATION SITE MODRES 1NL1 CGU A 7 GLU GAMMA-CARBOXY-GLUTAMIC ACID MODRES 1NL1 CGU A 8 GLU GAMMA-CARBOXY-GLUTAMIC ACID MODRES 1NL1 CGU A 15 GLU GAMMA-CARBOXY-GLUTAMIC ACID MODRES 1NL1 CGU A 17 GLU GAMMA-CARBOXY-GLUTAMIC ACID MODRES 1NL1 CGU A 20 GLU GAMMA-CARBOXY-GLUTAMIC ACID MODRES 1NL1 CGU A 21 GLU GAMMA-CARBOXY-GLUTAMIC ACID MODRES 1NL1 CGU A 26 GLU GAMMA-CARBOXY-GLUTAMIC ACID MODRES 1NL1 CGU A 27 GLU GAMMA-CARBOXY-GLUTAMIC ACID MODRES 1NL1 CGU A 30 GLU GAMMA-CARBOXY-GLUTAMIC ACID MODRES 1NL1 CGU A 33 GLU GAMMA-CARBOXY-GLUTAMIC ACID HET CGU A 7 12 HET CGU A 8 12 HET CGU A 15 12 HET CGU A 17 12 HET CGU A 20 12 HET CGU A 21 12 HET CGU A 26 12 HET CGU A 27 12 HET CGU A 30 12 HET CGU A 33 12 HET NAG B 1 14 HET NAG B 2 14 HET NAG A 311 14 HET CA A 201 1 HET CA A 202 1 HET CA A 203 1 HET CA A 204 1 HET CA A 205 1 HET CA A 206 1 HET CA A 207 1 HETNAM CGU GAMMA-CARBOXY-GLUTAMIC ACID HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM CA CALCIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 1 CGU 10(C6 H9 N O6) FORMUL 2 NAG 3(C8 H15 N O6) FORMUL 4 CA 7(CA 2+) FORMUL 11 HOH *159(H2 O) HELIX 1 1 LEU A 6 ARG A 10 5 5 HELIX 2 2 ASN A 13 LEU A 19 1 7 HELIX 3 3 SER A 24 LEU A 32 1 9 HELIX 4 4 SER A 34 CYS A 48 1 15 HELIX 5 5 PRO A 54 GLY A 64 1 11 SHEET 1 A 2 TRP A 126 TYR A 128 0 SHEET 2 A 2 ARG A 136 GLU A 138 -1 O GLU A 137 N CYS A 127 SSBOND 1 CYS A 18 CYS A 23 1555 1555 2.06 SSBOND 2 CYS A 48 CYS A 61 1555 1555 2.02 SSBOND 3 CYS A 66 CYS A 144 1555 1555 2.04 SSBOND 4 CYS A 87 CYS A 127 1555 1555 2.01 SSBOND 5 CYS A 115 CYS A 139 1555 1555 2.01 LINK C LEU A 6 N CGU A 7 1555 1555 1.32 LINK C CGU A 7 N CGU A 8 1555 1555 1.35 LINK C CGU A 8 N VAL A 9 1555 1555 1.32 LINK C LEU A 14 N CGU A 15 1555 1555 1.34 LINK C CGU A 15 N ARG A 16 1555 1555 1.34 LINK C ARG A 16 N CGU A 17 1555 1555 1.31 LINK C CGU A 17 N CYS A 18 1555 1555 1.33 LINK C LEU A 19 N CGU A 20 1555 1555 1.34 LINK C CGU A 20 N CGU A 21 1555 1555 1.34 LINK C CGU A 21 N PRO A 22 1555 1555 1.34 LINK C ARG A 25 N CGU A 26 1555 1555 1.34 LINK C CGU A 26 N CGU A 27 1555 1555 1.33 LINK C CGU A 27 N ALA A 28 1555 1555 1.33 LINK C PHE A 29 N CGU A 30 1555 1555 1.32 LINK C CGU A 30 N ALA A 31 1555 1555 1.34 LINK C LEU A 32 N CGU A 33 1555 1555 1.33 LINK C CGU A 33 N SER A 34 1555 1555 1.34 LINK ND2 ASN A 77 C1 NAG B 1 1555 1555 1.46 LINK ND2 ASN A 101 C1 NAG A 311 1555 1555 1.45 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.38 LINK O ALA A 1 CA CA A 204 1555 1555 2.96 LINK O ALA A 1 CA CA A 205 1555 1555 2.42 LINK OD1 ASN A 2 CA CA A 204 1555 1555 2.38 LINK OE11 CGU A 7 CA CA A 204 1555 1555 2.51 LINK OE12 CGU A 7 CA CA A 205 1555 1555 2.54 LINK OE11 CGU A 7 CA CA A 205 1555 1555 2.60 LINK OE12 CGU A 8 CA CA A 202 1555 1555 2.32 LINK OE21 CGU A 8 CA CA A 202 1555 1555 2.58 LINK OE21 CGU A 8 CA CA A 203 1555 1555 2.33 LINK OE22 CGU A 8 CA CA A 203 1555 1555 2.89 LINK OE22 CGU A 8 CA CA A 204 1555 1555 2.23 LINK OE21 CGU A 15 CA CA A 201 4467 1555 2.64 LINK OE22 CGU A 15 CA CA A 201 4467 1555 2.41 LINK OE21 CGU A 15 CA CA A 207 1555 1555 1.94 LINK OE12 CGU A 15 CA CA A 207 1555 1555 2.36 LINK OE11 CGU A 17 CA CA A 203 1555 1555 2.63 LINK OE21 CGU A 17 CA CA A 204 1555 1555 2.42 LINK OE11 CGU A 17 CA CA A 204 1555 1555 2.52 LINK OE21 CGU A 17 CA CA A 205 1555 1555 2.50 LINK OE22 CGU A 17 CA CA A 205 1555 1555 2.62 LINK OE21 CGU A 20 CA CA A 207 1555 1555 1.73 LINK OE11 CGU A 20 CA CA A 207 1555 1555 2.32 LINK OE21 CGU A 21 CA CA A 205 1555 1555 2.79 LINK OE22 CGU A 21 CA CA A 205 1555 1555 2.38 LINK OE12 CGU A 21 CA CA A 206 1555 1555 2.24 LINK OE21 CGU A 21 CA CA A 206 1555 1555 2.51 LINK OE12 CGU A 26 CA CA A 201 1555 1555 2.41 LINK OE21 CGU A 26 CA CA A 201 1555 1555 2.26 LINK OE12 CGU A 27 CA CA A 202 1555 1555 2.51 LINK OE11 CGU A 27 CA CA A 203 1555 1555 2.37 LINK OE11 CGU A 27 CA CA A 204 1555 1555 2.55 LINK OE22 CGU A 27 CA CA A 204 1555 1555 2.44 LINK OE11 CGU A 30 CA CA A 201 1555 1555 2.16 LINK OE22 CGU A 30 CA CA A 201 1555 1555 2.39 LINK OE21 CGU A 30 CA CA A 202 1555 1555 2.44 LINK OE22 CGU A 30 CA CA A 202 1555 1555 2.47 LINK OE21 CGU A 30 CA CA A 203 1555 1555 2.55 LINK CA CA A 201 O HOH A 394 1555 1555 2.36 LINK CA CA A 201 O HOH A 458 1555 1555 2.49 LINK CA CA A 202 O HOH A 456 1555 1555 1.97 LINK CA CA A 202 O HOH A 457 1555 1555 2.42 LINK CA CA A 203 O HOH A 313 1555 1555 2.43 LINK CA CA A 203 O HOH A 333 1555 1555 2.34 LINK CA CA A 203 O HOH A 455 1555 1555 2.10 LINK CA CA A 205 O HOH A 459 1555 1555 2.43 LINK CA CA A 205 O HOH A 463 1555 1555 2.49 LINK CA CA A 206 O HOH A 460 1555 1555 2.44 LINK CA CA A 206 O HOH A 461 1555 1555 2.49 LINK CA CA A 206 O HOH A 462 1555 1555 2.60 LINK CA CA A 206 O HOH A 464 1555 1555 2.28 LINK CA CA A 206 O HOH A 465 1555 1555 2.63 LINK CA CA A 207 O HOH A 443 1555 1555 3.18 LINK CA CA A 207 O HOH A 469 1555 1555 2.29 CISPEP 1 ASN A 53 PRO A 54 0 -0.05 CISPEP 2 TYR A 94 PRO A 95 0 -0.13 CRYST1 39.188 53.443 128.173 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025518 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018712 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007802 0.00000