HEADER HYDROLASE 09-MAY-00 1EZ2 TITLE THREE-DIMENSIONAL STRUCTURE OF THE ZINC-CONTAINING PHOSPHOTRIESTERASE TITLE 2 WITH BOUND SUBSTRATE ANALOG DIISOPROPYLMETHYL PHOSPHONATE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOTRIESTERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PARATHION HYDROLASE, PTE; COMPND 5 EC: 3.1.8.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BREVUNDIMONAS DIMINUTA; SOURCE 3 ORGANISM_TAXID: 293; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PKK01 KEYWDS HYDROLASE ZINC ORGANOPHOSPHATE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR H.M.HOLDEN,M.M.BENNING,F.M.RAUSHEL,S.-B.HONG REVDAT 4 04-OCT-17 1EZ2 1 REMARK REVDAT 3 24-FEB-09 1EZ2 1 VERSN REVDAT 2 01-APR-03 1EZ2 1 JRNL REVDAT 1 20-DEC-00 1EZ2 0 JRNL AUTH M.M.BENNING,S.B.HONG,F.M.RAUSHEL,H.M.HOLDEN JRNL TITL THE BINDING OF SUBSTRATE ANALOGS TO PHOSPHOTRIESTERASE. JRNL REF J.BIOL.CHEM. V. 275 30556 2000 JRNL REFN ISSN 0021-9258 JRNL PMID 10871616 JRNL DOI 10.1074/JBC.M003852200 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.0 REMARK 3 NUMBER OF REFLECTIONS : 58525 REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.1830 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 58525 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5022 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 286 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : 0.012 ; NULL ; NULL REMARK 3 BOND ANGLES (DEGREES) : 2.100 ; NULL ; NULL REMARK 3 TORSION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : 0.006 ; NULL ; NULL REMARK 3 GENERAL PLANES (A) : 0.007 ; NULL ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS (A) : NULL ; NULL ; NULL REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : TNT STANDARD GEOMETRY REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1EZ2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-JUN-00. REMARK 100 THE DEPOSITION ID IS D_1000011047. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-OCT-97 REMARK 200 TEMPERATURE (KELVIN) : 277 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : SIEMENS HI-STAR REMARK 200 INTENSITY-INTEGRATION SOFTWARE : FRAMBO REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58525 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.0 REMARK 200 DATA REDUNDANCY : 2.600 REMARK 200 R MERGE (I) : 0.04500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.99 REMARK 200 COMPLETENESS FOR SHELL (%) : 78.0 REMARK 200 DATA REDUNDANCY IN SHELL : 1.40 REMARK 200 R MERGE FOR SHELL (I) : 0.16200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: TNT REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, SODIUM CHLORIDE, 2 REMARK 280 -PHENYLETHANOL DIISOPROPYLMETHYL PHOSPHONATE, PH 9.0, BATCH, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 64.70000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.50000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 64.70000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 45.50000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A DIMER FORMED BY REMARK 300 CHAINS A AND B. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -152.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 364 REMARK 465 SER A 365 REMARK 465 ALA B 364 REMARK 465 SER B 365 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 35 CG OD1 OD2 REMARK 470 ARG A 363 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 35 CG OD1 OD2 REMARK 470 ARG B 363 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 181 CD GLU A 181 OE2 0.067 REMARK 500 GLU A 263 CD GLU A 263 OE2 0.068 REMARK 500 GLU A 338 CD GLU A 338 OE2 0.071 REMARK 500 GLU A 344 CD GLU A 344 OE2 0.076 REMARK 500 GLU B 115 CD GLU B 115 OE2 0.066 REMARK 500 GLU B 338 CD GLU B 338 OE2 0.066 REMARK 500 GLU B 344 CD GLU B 344 OE2 0.067 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 85 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG A 89 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ASP A 100 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP A 100 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 ASP A 121 CB - CG - OD2 ANGL. DEV. = -5.4 DEGREES REMARK 500 ASP A 133 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP A 133 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 ARG A 139 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 164 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ASP A 208 CB - CG - OD1 ANGL. DEV. = 6.5 DEGREES REMARK 500 ASP A 208 CB - CG - OD2 ANGL. DEV. = -6.8 DEGREES REMARK 500 ASP A 232 CB - CG - OD1 ANGL. DEV. = 6.6 DEGREES REMARK 500 ASP A 232 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 ASP A 235 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP A 235 CB - CG - OD2 ANGL. DEV. = -6.7 DEGREES REMARK 500 ASP A 264 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 264 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 ASP A 315 CB - CG - OD2 ANGL. DEV. = -5.4 DEGREES REMARK 500 ASP A 323 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 ARG A 356 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG B 89 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG B 89 NE - CZ - NH2 ANGL. DEV. = -4.8 DEGREES REMARK 500 ARG B 96 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ASP B 100 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP B 100 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 ARG B 108 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG B 139 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG B 152 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 TYR B 156 CB - CG - CD2 ANGL. DEV. = -5.1 DEGREES REMARK 500 TYR B 156 CB - CG - CD2 ANGL. DEV. = 4.3 DEGREES REMARK 500 TYR B 156 CB - CG - CD1 ANGL. DEV. = 4.8 DEGREES REMARK 500 TYR B 156 CB - CG - CD1 ANGL. DEV. = -5.5 DEGREES REMARK 500 ARG B 189 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ALA B 203 N - CA - C ANGL. DEV. = -16.5 DEGREES REMARK 500 ASP B 232 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP B 232 CB - CG - OD2 ANGL. DEV. = -6.1 DEGREES REMARK 500 ASP B 264 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP B 289 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ASP B 301 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ARG B 319 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ASP B 323 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 61 -141.90 -142.88 REMARK 500 TRP A 131 -146.80 -103.70 REMARK 500 GLU A 159 -132.12 54.84 REMARK 500 ASP A 236 86.03 -67.70 REMARK 500 SER A 308 38.84 -85.11 REMARK 500 VAL A 351 -58.08 -121.98 REMARK 500 SER B 61 -142.47 -141.82 REMARK 500 TRP B 131 -148.49 -99.75 REMARK 500 GLU B 159 -128.24 50.57 REMARK 500 GLU B 263 -19.87 -49.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 KCX A 169 OQ1 REMARK 620 2 HIS A 201 ND1 104.4 REMARK 620 3 HIS A 230 NE2 99.4 92.6 REMARK 620 4 HOH A1551 O 111.4 140.9 96.6 REMARK 620 5 DII A1403 O1 127.8 74.3 132.7 71.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 57 NE2 REMARK 620 2 KCX A 169 OQ2 88.0 REMARK 620 3 HIS A 55 NE2 117.5 102.3 REMARK 620 4 ASP A 301 OD2 85.9 173.7 82.1 REMARK 620 5 HOH A1551 O 129.9 94.5 110.8 88.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 55 NE2 REMARK 620 2 KCX B 169 OQ1 102.8 REMARK 620 3 ASP B 301 OD2 82.7 172.1 REMARK 620 4 HOH B2609 O 120.0 87.3 94.9 REMARK 620 5 HIS B 57 NE2 109.6 86.5 86.3 130.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 230 NE2 REMARK 620 2 DII B2403 O1 137.4 REMARK 620 3 HOH B2609 O 105.3 69.3 REMARK 620 4 HIS B 201 ND1 93.0 73.6 140.6 REMARK 620 5 KCX B 169 OQ2 108.2 113.9 106.7 99.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DII A 1403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DII B 2403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1EYW RELATED DB: PDB REMARK 900 1EYW CONTAINS THE SAME ENZYME COMPLEXED WITH TRIETHYLPHOSPHATE DBREF 1EZ2 A 35 365 UNP P0A434 OPD_BREDI 35 365 DBREF 1EZ2 B 35 365 UNP P0A434 OPD_BREDI 35 365 SEQADV 1EZ2 KCX A 169 UNP P0A434 LYS 169 MODIFIED RESIDUE SEQADV 1EZ2 KCX B 169 UNP P0A434 LYS 169 MODIFIED RESIDUE SEQRES 1 A 331 ASP ARG ILE ASN THR VAL ARG GLY PRO ILE THR ILE SER SEQRES 2 A 331 GLU ALA GLY PHE THR LEU THR HIS GLU HIS ILE CYS GLY SEQRES 3 A 331 SER SER ALA GLY PHE LEU ARG ALA TRP PRO GLU PHE PHE SEQRES 4 A 331 GLY SER ARG LYS ALA LEU ALA GLU LYS ALA VAL ARG GLY SEQRES 5 A 331 LEU ARG ARG ALA ARG ALA ALA GLY VAL ARG THR ILE VAL SEQRES 6 A 331 ASP VAL SER THR PHE ASP ILE GLY ARG ASP VAL SER LEU SEQRES 7 A 331 LEU ALA GLU VAL SER ARG ALA ALA ASP VAL HIS ILE VAL SEQRES 8 A 331 ALA ALA THR GLY LEU TRP PHE ASP PRO PRO LEU SER MET SEQRES 9 A 331 ARG LEU ARG SER VAL GLU GLU LEU THR GLN PHE PHE LEU SEQRES 10 A 331 ARG GLU ILE GLN TYR GLY ILE GLU ASP THR GLY ILE ARG SEQRES 11 A 331 ALA GLY ILE ILE KCX VAL ALA THR THR GLY LYS ALA THR SEQRES 12 A 331 PRO PHE GLN GLU LEU VAL LEU LYS ALA ALA ALA ARG ALA SEQRES 13 A 331 SER LEU ALA THR GLY VAL PRO VAL THR THR HIS THR ALA SEQRES 14 A 331 ALA SER GLN ARG ASP GLY GLU GLN GLN ALA ALA ILE PHE SEQRES 15 A 331 GLU SER GLU GLY LEU SER PRO SER ARG VAL CYS ILE GLY SEQRES 16 A 331 HIS SER ASP ASP THR ASP ASP LEU SER TYR LEU THR ALA SEQRES 17 A 331 LEU ALA ALA ARG GLY TYR LEU ILE GLY LEU ASP HIS ILE SEQRES 18 A 331 PRO HIS SER ALA ILE GLY LEU GLU ASP ASN ALA SER ALA SEQRES 19 A 331 SER ALA LEU LEU GLY ILE ARG SER TRP GLN THR ARG ALA SEQRES 20 A 331 LEU LEU ILE LYS ALA LEU ILE ASP GLN GLY TYR MET LYS SEQRES 21 A 331 GLN ILE LEU VAL SER ASN ASP TRP LEU PHE GLY PHE SER SEQRES 22 A 331 SER TYR VAL THR ASN ILE MET ASP VAL MET ASP ARG VAL SEQRES 23 A 331 ASN PRO ASP GLY MET ALA PHE ILE PRO LEU ARG VAL ILE SEQRES 24 A 331 PRO PHE LEU ARG GLU LYS GLY VAL PRO GLN GLU THR LEU SEQRES 25 A 331 ALA GLY ILE THR VAL THR ASN PRO ALA ARG PHE LEU SER SEQRES 26 A 331 PRO THR LEU ARG ALA SER SEQRES 1 B 331 ASP ARG ILE ASN THR VAL ARG GLY PRO ILE THR ILE SER SEQRES 2 B 331 GLU ALA GLY PHE THR LEU THR HIS GLU HIS ILE CYS GLY SEQRES 3 B 331 SER SER ALA GLY PHE LEU ARG ALA TRP PRO GLU PHE PHE SEQRES 4 B 331 GLY SER ARG LYS ALA LEU ALA GLU LYS ALA VAL ARG GLY SEQRES 5 B 331 LEU ARG ARG ALA ARG ALA ALA GLY VAL ARG THR ILE VAL SEQRES 6 B 331 ASP VAL SER THR PHE ASP ILE GLY ARG ASP VAL SER LEU SEQRES 7 B 331 LEU ALA GLU VAL SER ARG ALA ALA ASP VAL HIS ILE VAL SEQRES 8 B 331 ALA ALA THR GLY LEU TRP PHE ASP PRO PRO LEU SER MET SEQRES 9 B 331 ARG LEU ARG SER VAL GLU GLU LEU THR GLN PHE PHE LEU SEQRES 10 B 331 ARG GLU ILE GLN TYR GLY ILE GLU ASP THR GLY ILE ARG SEQRES 11 B 331 ALA GLY ILE ILE KCX VAL ALA THR THR GLY LYS ALA THR SEQRES 12 B 331 PRO PHE GLN GLU LEU VAL LEU LYS ALA ALA ALA ARG ALA SEQRES 13 B 331 SER LEU ALA THR GLY VAL PRO VAL THR THR HIS THR ALA SEQRES 14 B 331 ALA SER GLN ARG ASP GLY GLU GLN GLN ALA ALA ILE PHE SEQRES 15 B 331 GLU SER GLU GLY LEU SER PRO SER ARG VAL CYS ILE GLY SEQRES 16 B 331 HIS SER ASP ASP THR ASP ASP LEU SER TYR LEU THR ALA SEQRES 17 B 331 LEU ALA ALA ARG GLY TYR LEU ILE GLY LEU ASP HIS ILE SEQRES 18 B 331 PRO HIS SER ALA ILE GLY LEU GLU ASP ASN ALA SER ALA SEQRES 19 B 331 SER ALA LEU LEU GLY ILE ARG SER TRP GLN THR ARG ALA SEQRES 20 B 331 LEU LEU ILE LYS ALA LEU ILE ASP GLN GLY TYR MET LYS SEQRES 21 B 331 GLN ILE LEU VAL SER ASN ASP TRP LEU PHE GLY PHE SER SEQRES 22 B 331 SER TYR VAL THR ASN ILE MET ASP VAL MET ASP ARG VAL SEQRES 23 B 331 ASN PRO ASP GLY MET ALA PHE ILE PRO LEU ARG VAL ILE SEQRES 24 B 331 PRO PHE LEU ARG GLU LYS GLY VAL PRO GLN GLU THR LEU SEQRES 25 B 331 ALA GLY ILE THR VAL THR ASN PRO ALA ARG PHE LEU SER SEQRES 26 B 331 PRO THR LEU ARG ALA SER MODRES 1EZ2 KCX A 169 LYS LYSINE NZ-CARBOXYLIC ACID MODRES 1EZ2 KCX B 169 LYS LYSINE NZ-CARBOXYLIC ACID HET KCX A 169 12 HET KCX B 169 12 HET ZN A 401 1 HET ZN A 402 1 HET DII A1403 11 HET ZN B 401 1 HET ZN B 402 1 HET DII B2403 11 HETNAM KCX LYSINE NZ-CARBOXYLIC ACID HETNAM ZN ZINC ION HETNAM DII METHYLPHOSPHONIC ACID DIISOPROPYL ESTER FORMUL 1 KCX 2(C7 H14 N2 O4) FORMUL 3 ZN 4(ZN 2+) FORMUL 5 DII 2(C7 H17 O3 P) FORMUL 9 HOH *286(H2 O) HELIX 1 1 SER A 47 ALA A 49 5 3 HELIX 2 2 GLY A 64 TRP A 69 1 6 HELIX 3 3 PRO A 70 GLY A 74 5 5 HELIX 4 4 SER A 75 ALA A 93 1 19 HELIX 5 5 THR A 103 GLY A 107 5 5 HELIX 6 6 ASP A 109 ASP A 121 1 13 HELIX 7 7 PRO A 135 LEU A 140 1 6 HELIX 8 8 SER A 142 TYR A 156 1 15 HELIX 9 9 THR A 177 GLY A 195 1 19 HELIX 10 10 ALA A 203 GLN A 206 5 4 HELIX 11 11 ARG A 207 GLU A 219 1 13 HELIX 12 12 SER A 222 SER A 224 5 3 HELIX 13 13 HIS A 230 THR A 234 5 5 HELIX 14 14 ASP A 236 GLY A 247 1 12 HELIX 15 15 ASN A 265 GLY A 273 1 9 HELIX 16 16 SER A 276 GLN A 290 1 15 HELIX 17 17 TYR A 292 LYS A 294 5 3 HELIX 18 18 ASN A 312 ASN A 321 1 10 HELIX 19 19 ASP A 323 MET A 325 5 3 HELIX 20 20 ALA A 326 ARG A 331 1 6 HELIX 21 21 ARG A 331 LYS A 339 1 9 HELIX 22 22 PRO A 342 VAL A 351 1 10 HELIX 23 23 VAL A 351 SER A 359 1 9 HELIX 24 24 ILE B 46 GLY B 50 1 5 HELIX 25 25 GLY B 64 TRP B 69 1 6 HELIX 26 26 PRO B 70 GLY B 74 5 5 HELIX 27 27 SER B 75 ALA B 93 1 19 HELIX 28 28 THR B 103 GLY B 107 5 5 HELIX 29 29 ASP B 109 ASP B 121 1 13 HELIX 30 30 PRO B 135 LEU B 140 1 6 HELIX 31 31 SER B 142 TYR B 156 1 15 HELIX 32 32 THR B 177 GLY B 195 1 19 HELIX 33 33 ALA B 203 GLN B 206 5 4 HELIX 34 34 ARG B 207 GLU B 219 1 13 HELIX 35 35 SER B 222 SER B 224 5 3 HELIX 36 36 HIS B 230 THR B 234 5 5 HELIX 37 37 ASP B 236 ARG B 246 1 11 HELIX 38 38 ASN B 265 GLY B 273 1 9 HELIX 39 39 SER B 276 GLN B 290 1 15 HELIX 40 40 TYR B 292 LYS B 294 5 3 HELIX 41 41 ASN B 312 ASN B 321 1 10 HELIX 42 42 ASP B 323 MET B 325 5 3 HELIX 43 43 ALA B 326 ARG B 331 1 6 HELIX 44 44 ARG B 331 LYS B 339 1 9 HELIX 45 45 PRO B 342 VAL B 351 1 10 HELIX 46 46 VAL B 351 SER B 359 1 9 SHEET 1 A 2 ARG A 36 THR A 39 0 SHEET 2 A 2 GLY A 42 THR A 45 -1 N GLY A 42 O THR A 39 SHEET 1 B 3 THR A 52 GLU A 56 0 SHEET 2 B 3 THR A 97 ASP A 100 1 O THR A 97 N LEU A 53 SHEET 3 B 3 HIS A 123 VAL A 125 1 O HIS A 123 N ILE A 98 SHEET 1 C 2 CYS A 59 GLY A 60 0 SHEET 2 C 2 GLY A 305 PHE A 306 1 O GLY A 305 N GLY A 60 SHEET 1 D 5 ILE A 168 ALA A 171 0 SHEET 2 D 5 VAL A 198 HIS A 201 1 N THR A 199 O ILE A 168 SHEET 3 D 5 VAL A 226 ILE A 228 1 O CYS A 227 N THR A 200 SHEET 4 D 5 LEU A 249 LEU A 252 1 O LEU A 249 N ILE A 228 SHEET 5 D 5 ILE A 296 VAL A 298 1 O LEU A 297 N LEU A 252 SHEET 1 E 2 ARG B 36 THR B 39 0 SHEET 2 E 2 GLY B 42 THR B 45 -1 N GLY B 42 O THR B 39 SHEET 1 F 3 THR B 52 GLU B 56 0 SHEET 2 F 3 THR B 97 ASP B 100 1 O THR B 97 N LEU B 53 SHEET 3 F 3 HIS B 123 VAL B 125 1 O HIS B 123 N ILE B 98 SHEET 1 G 2 CYS B 59 GLY B 60 0 SHEET 2 G 2 GLY B 305 PHE B 306 1 O GLY B 305 N GLY B 60 SHEET 1 H 5 ILE B 168 ALA B 171 0 SHEET 2 H 5 VAL B 198 HIS B 201 1 N THR B 199 O ILE B 168 SHEET 3 H 5 VAL B 226 ILE B 228 1 O CYS B 227 N THR B 200 SHEET 4 H 5 LEU B 249 LEU B 252 1 O LEU B 249 N ILE B 228 SHEET 5 H 5 ILE B 296 VAL B 298 1 O LEU B 297 N LEU B 252 LINK C ILE A 168 N KCX A 169 1555 1555 1.31 LINK C KCX A 169 N VAL A 170 1555 1555 1.34 LINK OQ1 KCX A 169 ZN ZN A 402 1555 1555 1.85 LINK ZN ZN A 401 NE2 HIS A 57 1555 1555 2.04 LINK ZN ZN A 401 OQ2 KCX A 169 1555 1555 2.30 LINK ZN ZN A 401 NE2 HIS A 55 1555 1555 1.73 LINK ZN ZN A 401 OD2 ASP A 301 1555 1555 2.33 LINK ZN ZN A 401 O HOH A1551 1555 1555 2.20 LINK ZN ZN A 402 ND1 HIS A 201 1555 1555 2.30 LINK ZN ZN A 402 NE2 HIS A 230 1555 1555 1.97 LINK ZN ZN A 402 O HOH A1551 1555 1555 2.09 LINK ZN ZN A 402 O1 DII A1403 1555 1555 2.54 LINK C ILE B 168 N KCX B 169 1555 1555 1.32 LINK C KCX B 169 N VAL B 170 1555 1555 1.36 LINK ZN ZN B 401 NE2 HIS B 55 1555 1555 1.78 LINK ZN ZN B 401 OQ1 KCX B 169 1555 1555 2.24 LINK ZN ZN B 401 OD2 ASP B 301 1555 1555 2.28 LINK ZN ZN B 401 O HOH B2609 1555 1555 2.11 LINK ZN ZN B 401 NE2 HIS B 57 1555 1555 2.08 LINK ZN ZN B 402 NE2 HIS B 230 1555 1555 2.01 LINK ZN ZN B 402 O1 DII B2403 1555 1555 2.57 LINK ZN ZN B 402 O HOH B2609 1555 1555 1.95 LINK ZN ZN B 402 ND1 HIS B 201 1555 1555 2.04 LINK ZN ZN B 402 OQ2 KCX B 169 1555 1555 2.07 SITE 1 AC1 6 HIS A 55 HIS A 57 KCX A 169 ASP A 301 SITE 2 AC1 6 ZN A 402 HOH A1551 SITE 1 AC2 6 KCX A 169 HIS A 201 HIS A 230 ZN A 401 SITE 2 AC2 6 DII A1403 HOH A1551 SITE 1 AC3 6 HIS B 55 HIS B 57 KCX B 169 ASP B 301 SITE 2 AC3 6 ZN B 402 HOH B2609 SITE 1 AC4 6 KCX B 169 HIS B 201 HIS B 230 ZN B 401 SITE 2 AC4 6 DII B2403 HOH B2609 SITE 1 AC5 6 HIS A 57 TRP A 131 HIS A 201 SER A 308 SITE 2 AC5 6 ZN A 402 HOH A1551 SITE 1 AC6 7 TRP B 131 PHE B 132 HIS B 201 LEU B 271 SITE 2 AC6 7 ASP B 301 ZN B 402 HOH B2609 CRYST1 129.400 91.000 69.200 90.00 91.60 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007728 0.000000 0.000216 0.00000 SCALE2 0.000000 0.010989 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014457 0.00000