HEADER HYDROLASE 24-FEB-00 1EI5 TITLE CRYSTAL STRUCTURE OF A D-AMINOPEPTIDASE FROM OCHROBACTRUM TITLE 2 ANTHROPI COMPND MOL_ID: 1; COMPND 2 MOLECULE: D-AMINOPEPTIDASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DAP; COMPND 5 EC: 3.4.11.19; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: OCHROBACTRUM ANTHROPI; SOURCE 3 ORGANISM_TAXID: 529; SOURCE 4 STRAIN: SCRC C1-38; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PUC18 KEYWDS D-AMINOPEPTIDASE, PENICILLIN BINDING PROTEIN, ALPHA/BETA KEYWDS 2 DOMAIN, BETA BARREL DOMAIN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.BOMPARD-GILLES,H.REMAUT,V.VILLERET,T.PRANGE,L.FANUEL, AUTHOR 2 J.JORIS,J.-M.FRERE,J.VAN BEEUMEN REVDAT 4 24-FEB-09 1EI5 1 VERSN REVDAT 3 01-APR-03 1EI5 1 JRNL REVDAT 2 24-APR-02 1EI5 1 REMARK REVDAT 1 04-OCT-00 1EI5 0 JRNL AUTH C.BOMPARD-GILLES,H.REMAUT,V.VILLERET,T.PRANGE, JRNL AUTH 2 L.FANUEL,M.DELMARCELLE,B.JORIS,J.FRERE, JRNL AUTH 3 J.VAN BEEUMEN JRNL TITL CRYSTAL STRUCTURE OF A D-AMINOPEPTIDASE FROM JRNL TITL 2 OCHROBACTRUM ANTHROPI, A NEW MEMBER OF THE JRNL TITL 3 'PENICILLIN-RECOGNIZING ENZYME' FAMILY. JRNL REF STRUCTURE FOLD.DES. V. 8 971 2000 JRNL REFN ISSN 0969-2126 JRNL PMID 10986464 JRNL DOI 10.1016/S0969-2126(00)00188-X REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 12.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 54705 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM 5% REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2735 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3961 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 368 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.93 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.012 ; NULL REMARK 3 ANGLE DISTANCE (A) : 2.400 ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1EI5 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-FEB-00. REMARK 100 THE RCSB ID CODE IS RCSB010597. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-OCT-98 REMARK 200 TEMPERATURE (KELVIN) : 277.0 REMARK 200 PH : 5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LURE REMARK 200 BEAMLINE : DW32 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62212 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.820 REMARK 200 RESOLUTION RANGE LOW (A) : 15.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : 12.990 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.82 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.89 REMARK 200 COMPLETENESS FOR SHELL (%) : 81.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.76 REMARK 200 R MERGE FOR SHELL (I) : 0.34600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 400, SODIUM ACETATE, PH 5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 102.32500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 41.43000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 41.43000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 51.16250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 41.43000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 41.43000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 153.48750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 41.43000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 41.43000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 51.16250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 41.43000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 41.43000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 153.48750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 102.32500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A DIMER CONSTRUCTED FROM REMARK 300 CHAIN A A SYMMETRY PARTNER GENERATED BY THE TWO-FOLD. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 180 NE CZ NH1 NH2 REMARK 470 LYS A 188 CE NZ REMARK 470 GLU A 249 CG CD OE1 OE2 REMARK 470 SER A 250 OG REMARK 470 SER A 333 OG REMARK 470 SER A 334 OG REMARK 470 SER A 335 OG REMARK 470 GLU A 336 CG CD OE1 OE2 REMARK 470 VAL A 337 CG1 CG2 REMARK 470 GLU A 341 CB CG CD OE1 OE2 REMARK 470 SER A 344 OG REMARK 470 HIS A 366 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 368 NE CZ NH1 NH2 REMARK 470 LYS A 416 CG CD CE NZ REMARK 470 LYS A 419 CG CD CE NZ REMARK 470 GLU A 421 CG CD OE1 OE2 REMARK 470 ASP A 496 CG OD1 OD2 REMARK 470 LYS A 497 CG CD CE NZ REMARK 470 GLU A 499 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO A 520 CD PRO A 520 N 0.089 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 123 CB - CG - OD1 ANGL. DEV. = 6.9 DEGREES REMARK 500 SER A 152 N - CA - CB ANGL. DEV. = 9.0 DEGREES REMARK 500 THR A 169 N - CA - CB ANGL. DEV. = -13.9 DEGREES REMARK 500 THR A 172 N - CA - CB ANGL. DEV. = -12.0 DEGREES REMARK 500 ASP A 195 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 THR A 196 N - CA - CB ANGL. DEV. = -15.6 DEGREES REMARK 500 ASP A 200 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 THR A 203 CA - CB - OG1 ANGL. DEV. = 13.2 DEGREES REMARK 500 THR A 217 N - CA - CB ANGL. DEV. = 12.3 DEGREES REMARK 500 ARG A 254 NE - CZ - NH1 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG A 254 NE - CZ - NH2 ANGL. DEV. = 4.3 DEGREES REMARK 500 THR A 261 N - CA - CB ANGL. DEV. = -16.0 DEGREES REMARK 500 ARG A 298 NE - CZ - NH2 ANGL. DEV. = 4.6 DEGREES REMARK 500 THR A 308 N - CA - CB ANGL. DEV. = -15.7 DEGREES REMARK 500 SER A 335 CA - C - O ANGL. DEV. = 12.9 DEGREES REMARK 500 GLU A 336 C - N - CA ANGL. DEV. = 15.7 DEGREES REMARK 500 ARG A 339 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 THR A 355 N - CA - CB ANGL. DEV. = -15.8 DEGREES REMARK 500 ARG A 396 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ALA A 482 CA - C - O ANGL. DEV. = -13.9 DEGREES REMARK 500 PRO A 483 N - CA - CB ANGL. DEV. = 7.2 DEGREES REMARK 500 ARG A 493 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ASP A 495 CB - CA - C ANGL. DEV. = -14.8 DEGREES REMARK 500 ARG A 517 NE - CZ - NH1 ANGL. DEV. = -4.6 DEGREES REMARK 500 PRO A 520 CA - N - CD ANGL. DEV. = -15.0 DEGREES REMARK 500 PRO A 520 C - N - CD ANGL. DEV. = 14.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 61 -124.65 48.82 REMARK 500 ALA A 226 -166.93 -168.43 REMARK 500 PHE A 272 52.47 39.58 REMARK 500 ASN A 313 42.56 -100.10 REMARK 500 GLU A 315 33.03 -91.37 REMARK 500 GLU A 336 132.35 -27.70 REMARK 500 HIS A 366 66.07 -34.68 REMARK 500 PHE A 373 -51.90 -145.61 REMARK 500 PRO A 483 150.70 -35.38 REMARK 500 ASP A 495 -179.76 -63.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 482 PRO A 483 -42.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ALA A 482 -20.83 REMARK 500 REMARK 500 REMARK: NULL DBREF 1EI5 A 1 520 UNP Q9ZBA9 Q9ZBA9_OCHAN 1 520 SEQRES 1 A 520 MET SER LYS PHE ASP THR SER ALA LEU GLU ALA PHE VAL SEQRES 2 A 520 ARG HIS ILE PRO GLN ASN TYR LYS GLY PRO GLY GLY VAL SEQRES 3 A 520 VAL ALA VAL VAL LYS ASP GLY GLU VAL VAL LEU GLN HIS SEQRES 4 A 520 ALA TRP GLY PHE ALA ASP LEU ARG THR ARG THR PRO MET SEQRES 5 A 520 THR LEU ASP THR ARG MET PRO ILE CYS SER VAL SER LYS SEQRES 6 A 520 GLN PHE THR CYS ALA VAL LEU LEU ASP ALA VAL GLY GLU SEQRES 7 A 520 PRO GLU LEU LEU ASP ASP ALA LEU GLU ALA TYR LEU ASP SEQRES 8 A 520 LYS PHE GLU ASP GLU ARG PRO ALA VAL ARG ASP LEU CYS SEQRES 9 A 520 ASN ASN GLN SER GLY LEU ARG ASP TYR TRP ALA LEU SER SEQRES 10 A 520 VAL LEU CYS GLY ALA ASP PRO GLU GLY VAL PHE LEU PRO SEQRES 11 A 520 ALA GLN ALA GLN SER LEU LEU ARG ARG LEU LYS THR THR SEQRES 12 A 520 HIS PHE GLU PRO GLY SER HIS TYR SER TYR CYS ASN GLY SEQRES 13 A 520 ASN PHE ARG ILE LEU ALA ASP LEU ILE GLU ALA HIS THR SEQRES 14 A 520 GLY ARG THR LEU VAL ASP ILE LEU SER GLU ARG ILE PHE SEQRES 15 A 520 ALA PRO ALA GLY MET LYS ARG ALA GLU LEU ILE SER ASP SEQRES 16 A 520 THR ALA LEU PHE ASP GLU CYS THR GLY TYR GLU GLY ASP SEQRES 17 A 520 THR VAL ARG GLY PHE LEU PRO ALA THR ASN ARG ILE GLN SEQRES 18 A 520 TRP MET GLY ASP ALA GLY ILE CYS ALA SER LEU ASN ASP SEQRES 19 A 520 MET ILE ALA TRP GLU GLN PHE ILE ASP ALA THR ARG ASP SEQRES 20 A 520 ASP GLU SER GLY LEU TYR ARG ARG LEU SER GLY PRO GLN SEQRES 21 A 520 THR PHE LYS ASP GLY VAL ALA ALA PRO TYR GLY PHE GLY SEQRES 22 A 520 LEU ASN LEU HIS GLU THR GLY GLY LYS ARG LEU THR GLY SEQRES 23 A 520 HIS GLY GLY ALA LEU ARG GLY TRP ARG CYS GLN ARG TRP SEQRES 24 A 520 HIS CYS ALA ASP GLU ARG LEU SER THR ILE ALA MET PHE SEQRES 25 A 520 ASN PHE GLU GLY GLY ALA SER GLU VAL ALA PHE LYS LEU SEQRES 26 A 520 MET ASN ILE ALA LEU GLY VAL SER SER SER GLU VAL SER SEQRES 27 A 520 ARG VAL GLU ALA ASP SER ALA TRP PHE GLY SER TRP LEU SEQRES 28 A 520 ASP ASP GLU THR GLY LEU VAL LEU SER LEU GLU ASP ALA SEQRES 29 A 520 GLY HIS GLY ARG MET LYS ALA ARG PHE GLY THR SER PRO SEQRES 30 A 520 GLU MET MET ASP VAL VAL SER ALA ASN GLU ALA ARG SER SEQRES 31 A 520 ALA VAL THR THR ILE ARG ARG ASP GLY GLU THR ILE GLU SEQRES 32 A 520 LEU VAL ARG ALA SER GLU ASN LEU ARG LEU SER MET LYS SEQRES 33 A 520 ARG VAL LYS GLY GLU ALA LYS HIS ASP ILE ILE GLY ARG SEQRES 34 A 520 TYR HIS SER ASP GLU LEU ASP ALA ASP LEU LEU LEU VAL SEQRES 35 A 520 SER GLU GLY GLY ALA ILE TYR GLY ALA PHE GLU GLY PHE SEQRES 36 A 520 LEU GLY LYS SER ASP MET TYR PRO LEU TYR SER VAL GLY SEQRES 37 A 520 SER ASP VAL TRP LEU LEU PRO VAL GLN ARG SER MET ASP SEQRES 38 A 520 ALA PRO SER PRO GLY GLU TRP LYS LEU VAL PHE ARG ARG SEQRES 39 A 520 ASP ASP LYS GLY GLU ILE THR GLY LEU SER VAL GLY CYS SEQRES 40 A 520 TRP LEU ALA ARG GLY VAL GLU TYR ARG ARG VAL GLN PRO FORMUL 2 HOH *368(H2 O) HELIX 1 1 THR A 6 HIS A 15 1 10 HELIX 2 2 HIS A 15 TYR A 20 1 6 HELIX 3 3 VAL A 63 VAL A 76 1 14 HELIX 4 4 GLU A 78 LEU A 81 5 4 HELIX 5 5 LEU A 82 LEU A 90 1 9 HELIX 6 6 ALA A 99 ASN A 105 1 7 HELIX 7 7 ASP A 112 CYS A 120 1 9 HELIX 8 8 LEU A 129 ARG A 139 1 11 HELIX 9 9 CYS A 154 GLY A 170 1 17 HELIX 10 10 THR A 172 ILE A 181 1 10 HELIX 11 11 ILE A 181 GLY A 186 1 6 HELIX 12 12 THR A 196 PHE A 199 5 4 HELIX 13 13 SER A 231 THR A 245 1 15 HELIX 14 14 GLY A 251 SER A 257 1 7 HELIX 15 15 GLY A 317 GLY A 331 1 15 HELIX 16 16 ASP A 343 PHE A 347 5 5 HELIX 17 17 ALA A 407 ASN A 410 5 4 SHEET 1 A 8 THR A 50 PRO A 51 0 SHEET 2 A 8 GLU A 34 ASP A 45 -1 N ALA A 44 O THR A 50 SHEET 3 A 8 GLY A 24 LYS A 31 -1 O GLY A 25 N TRP A 41 SHEET 4 A 8 LEU A 306 PHE A 312 -1 O SER A 307 N VAL A 30 SHEET 5 A 8 TRP A 294 CYS A 301 -1 O ARG A 295 N PHE A 312 SHEET 6 A 8 LYS A 282 LEU A 291 -1 O THR A 285 N HIS A 300 SHEET 7 A 8 LEU A 274 THR A 279 -1 N ASN A 275 O GLY A 286 SHEET 8 A 8 TYR A 270 GLY A 271 -1 N GLY A 271 O LEU A 274 SHEET 1 B 3 MET A 58 PRO A 59 0 SHEET 2 B 3 ILE A 228 ALA A 230 -1 N ALA A 230 O MET A 58 SHEET 3 B 3 GLU A 191 LEU A 192 -1 O GLU A 191 N CYS A 229 SHEET 1 C 2 TYR A 205 ASP A 208 0 SHEET 2 C 2 GLY A 212 PRO A 215 -1 N GLY A 212 O ASP A 208 SHEET 1 D 9 GLY A 348 LEU A 351 0 SHEET 2 D 9 VAL A 358 ASP A 363 -1 N LEU A 359 O TRP A 350 SHEET 3 D 9 ARG A 368 ARG A 372 -1 N LYS A 370 O GLU A 362 SHEET 4 D 9 GLU A 378 SER A 384 -1 O GLU A 378 N ALA A 371 SHEET 5 D 9 GLU A 387 ARG A 389 -1 O GLU A 387 N VAL A 383 SHEET 6 D 9 THR A 394 ASP A 398 -1 N ILE A 395 O ALA A 388 SHEET 7 D 9 THR A 401 ARG A 406 -1 O THR A 401 N ASP A 398 SHEET 8 D 9 LEU A 411 ARG A 417 -1 O LEU A 411 N ARG A 406 SHEET 9 D 9 GLY A 348 LEU A 351 -1 N LEU A 351 O LYS A 416 SHEET 1 E 9 TYR A 465 GLY A 468 0 SHEET 2 E 9 VAL A 471 VAL A 476 -1 O VAL A 471 N VAL A 467 SHEET 3 E 9 GLY A 486 ARG A 494 -1 O GLY A 486 N VAL A 476 SHEET 4 E 9 ILE A 500 CYS A 507 -1 N THR A 501 O ARG A 493 SHEET 5 E 9 ALA A 510 ARG A 517 -1 O ALA A 510 N CYS A 507 SHEET 6 E 9 GLY A 428 SER A 432 -1 N HIS A 431 O ARG A 516 SHEET 7 E 9 ALA A 437 GLU A 444 -1 O ALA A 437 N SER A 432 SHEET 8 E 9 ALA A 447 GLY A 454 -1 O ALA A 447 N GLU A 444 SHEET 9 E 9 GLY A 457 LYS A 458 -1 O GLY A 457 N GLY A 454 SHEET 1 F 9 TYR A 465 GLY A 468 0 SHEET 2 F 9 VAL A 471 VAL A 476 -1 O VAL A 471 N VAL A 467 SHEET 3 F 9 GLY A 486 ARG A 494 -1 O GLY A 486 N VAL A 476 SHEET 4 F 9 ILE A 500 CYS A 507 -1 N THR A 501 O ARG A 493 SHEET 5 F 9 ALA A 510 ARG A 517 -1 O ALA A 510 N CYS A 507 SHEET 6 F 9 GLY A 428 SER A 432 -1 N HIS A 431 O ARG A 516 SHEET 7 F 9 ALA A 437 GLU A 444 -1 O ALA A 437 N SER A 432 SHEET 8 F 9 ALA A 447 GLY A 454 -1 O ALA A 447 N GLU A 444 SHEET 9 F 9 TYR A 462 PRO A 463 -1 O TYR A 462 N GLY A 450 CRYST1 82.860 82.860 204.650 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012070 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012070 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004890 0.00000