OLDERADO

OLDERADO cluster and domain composition for PDB entry 2LMN

Structural Model for a 40-Residue Beta-Amyloid Fibril with Two-Fold Symmetry, Positive Stagger
Summary of Olderado results
Most representative model 8
Largest domain comprises residues A.30-A.37, B.28-B.37, C.28-C.39, D.30-D.39, E.29-E.39, F.30-F.36, G.31-G.39, H.28-H.28, H.30-H.37, I.28-I.39, J.29-J.39, K.28-K.28, K.30-K.39, L.30-L.39
RMSD of all models in ensemble (Cα atoms) 3.9 Å

Protein domains shown as surfaces Representative models from each cluster
View in 3D View in 3D

Domain composition (NMRCore)
Domain number and colour code Residues Core Cumulative core
1 A.30-A.37, B.28-B.37, C.28-C.39, D.30-D.39, E.29-E.39, F.30-F.36, G.31-G.39, H.28-H.28, H.30-H.37, I.28-I.39, J.29-J.39, K.28-K.28, K.30-K.39, L.30-L.39 37.7 % 37.7 %
2 G.10-G.23, H.10-H.23, I.10-I.22, J.13-J.23, K.10-K.22, L.13-L.23 23.9 % 61.6 %
3 A.14-A.21, B.10-B.24, C.10-C.22, D.14-D.23, E.10-E.22, F.13-F.23 22.0 % 83.7 %
4 A.22-A.28 2.2 % 85.9 %
5 G.29-G.30, J.26-J.28 1.6 % 87.4 %
6 A.10-A.13 1.3 % 88.7 %
7 D.10-D.13 1.3 % 89.9 %
8 D.26-D.28 0.9 % 90.9 %
9 E.26-E.28 0.9 % 91.8 %
10 F.10-F.12 0.9 % 92.8 %
11 F.38-F.40 0.9 % 93.7 %
12 G.26-G.28 0.9 % 94.6 %
13 H.38-H.40 0.9 % 95.6 %
14 J.10-J.12 0.9 % 96.5 %
15 L.10-L.12 0.9 % 97.5 %
16 A.38-A.39 0.6 % 98.1 %
17 B.38-B.39 0.6 % 98.7 %
18 C.23-C.24 0.6 % 99.3 %
19 L.26-L.27 0.6 % 100.0 %

Cluster identification (NMRClust)
Cluster number and colour code Representative Members
1 8 3, 4, 6, 8, 9, 10
2 5 1, 5, 7
 
List of outliers (subfamily with one member): 2