OLDERADO

OLDERADO cluster and domain composition for PDB entry 2KOX

NMR residual dipolar couplings identify long range correlated motions in the backbone of the protein ubiquitin
Summary of Olderado results
Most representative model 76
Largest domain comprises residues Chain A: 23-38
RMSD of all models in ensemble (Cα atoms) 1.7 Å

Protein domains shown as surfaces Representative models from each cluster
View in 3D View in 3D

Domain composition (NMRCore)
Domain number and colour code Residues Core Cumulative core
1 Chain A: 23-38 22.2 % 22.2 %
2 Chain A: 17-22, 52-58 18.1 % 40.3 %
3 Chain A: 1-6, 12-16 15.3 % 55.6 %
4 Chain A: 63-70 11.1 % 66.7 %
5 Chain A: 45-48 5.6 % 72.2 %
6 Chain A: 59-62 5.6 % 77.8 %
7 Chain A: 7-9 4.2 % 82.0 %
8 Chain A: 39-41 4.2 % 86.1 %
9 Chain A: 42-44 4.2 % 90.3 %
10 Chain A: 49-51 4.2 % 94.5 %
11 Chain A: 10-11 2.8 % 97.3 %
12 Chain A: 71-72 2.8 % 100.0 %

Cluster identification (NMRClust)
Cluster number and colour code Representative Members
1 76 1, 2, 9, 11, 20, 22, 23, 25, 38, 39, 40, 45, 54, 66, 76, 92, 94, 95, 104, 109, 119, 121, 130, 133, 148, 155, 162, 168, 201, 205, 226, 236, 247, 249, 251, 253, 264, 268, 276, 277, 283, 292, 293, 300, 301, 315, 317, 320, 325, 326, 332, 333, 340, 341, 353, 371, 373, 376, 379, 380, 381, 384, 396, 404, 406, 417, 429, 435, 437, 440, 443, 445, 461, 479, 495, 499, 504, 517, 519, 524, 532, 533, 534, 544, 545, 559, 567, 568, 571, 574, 581, 583, 589, 596, 598, 619, 628, 640
2 204 4, 10, 12, 37, 41, 57, 68, 103, 105, 140, 151, 153, 167, 177, 179, 180, 204, 209, 220, 229, 231, 233, 235, 246, 295, 297, 309, 310, 369, 394, 421, 423, 427, 428, 433, 436, 438, 485, 487, 492, 502, 522, 549, 551, 553, 555, 556, 561, 564, 582, 600, 614, 616, 627
3 202 88, 89, 116, 118, 138, 154, 159, 182, 192, 193, 196, 202, 215, 216, 217, 257, 281, 288, 291, 299, 311, 316, 344, 345, 351, 355, 358, 374, 407, 415, 416, 458, 465, 473, 476, 483, 513, 529, 537, 558, 563, 577, 591, 601, 602, 603
4 330 3, 5, 73, 84, 124, 136, 141, 152, 166, 230, 232, 252, 255, 269, 272, 274, 289, 296, 298, 321, 330, 377, 424, 453, 466, 488, 501, 530, 542, 557, 613, 615, 634
5 245 7, 69, 81, 111, 120, 139, 150, 158, 239, 243, 245, 261, 303, 307, 322, 350, 365, 367, 412, 450, 478, 514, 539, 578, 630
6 410 144, 163, 188, 227, 279, 294, 343, 346, 388, 398, 410, 419, 452, 471, 490, 505, 528, 535, 538, 547, 569, 588, 590, 610, 631
7 174 19, 70, 72, 83, 134, 174, 194, 198, 244, 290, 347, 354, 359, 382, 418, 430, 454, 456, 518, 584, 593, 597, 609, 612
8 91 27, 60, 65, 91, 98, 210, 360, 362, 397, 426, 432, 496, 552, 560, 617, 623
9 447 100, 238, 284, 383, 439, 447, 457, 472, 511, 536, 540, 575, 586, 638
10 214 43, 71, 86, 135, 171, 199, 203, 214, 263, 327, 444, 508, 572, 635
11 449 14, 55, 191, 212, 313, 324, 449, 516, 526, 580, 599, 607
12 31 8, 24, 31, 42, 48, 52, 53, 63, 102, 170, 334, 573
13 468 47, 74, 90, 129, 218, 280, 375, 448, 468, 474, 621
14 108 33, 67, 108, 112, 127, 172, 176, 234, 240, 509, 636
15 256 164, 241, 256, 363, 408, 489, 491, 527, 548, 618
16 200 30, 34, 87, 101, 147, 200, 262, 328, 392, 405
17 145 110, 145, 219, 266, 338, 372, 411, 475, 493, 494
18 400 224, 319, 385, 400, 409, 470, 592, 620, 622, 639
19 157 29, 93, 157, 221, 285, 349, 413, 477, 605
20 387 195, 211, 259, 275, 323, 387, 451, 515, 579
21 187 59, 61, 123, 125, 160, 181, 187, 414, 503
22 336 16, 80, 208, 270, 336, 441, 464, 565
23 399 49, 169, 175, 335, 399, 460, 463, 507
24 97 97, 106, 190, 213, 254, 318, 626
25 342 32, 64, 189, 248, 342, 391, 455
26 386 75, 96, 107, 128, 386, 420, 523
27 260 132, 183, 260, 576, 632, 637
28 366 77, 184, 302, 364, 366, 525
29 506 250, 378, 442, 506, 570, 633
30 562 178, 242, 306, 498, 562, 625
31 225 21, 62, 85, 149, 161, 225
32 329 222, 265, 329, 361, 395, 425
33 15 15, 35, 99, 142, 206, 520
34 587 197, 258, 286, 521, 585, 587
35 287 26, 223, 282, 287, 543, 606
36 337 17, 156, 273, 337, 401
37 462 422, 462, 486, 550, 554
38 143 79, 143, 207, 271
39 356 278, 356, 484, 611
40 510 173, 237, 446, 510
41 165 44, 165, 469, 541
42 467 403, 467, 531, 595
43 348 348, 389, 604
44 308 308, 482, 546
45 481 6, 481, 608
46 267 56, 267, 393
47 500 305, 497, 500
48 186 58, 122, 186
49 51 51, 115, 331
50 629 566, 629
51 82 18, 82
52 390 185, 390
53 228 36, 228
54 78 46, 78
55 434 370, 434
56 431 28, 431
57 357 13, 357
58 512 352, 512
59 402 304, 402
60 114 50, 114
 
List of outliers (subfamily with one member): 113, 117, 126, 131, 137, 146, 312, 314, 339, 368, 459, 480, 594, 624