OLDERADO

OLDERADO cluster and domain composition for PDB entry 1X5C

The solution structure of the second thioredoxin-like domain of human Protein disulfide-isomerase
Summary of Olderado results
Most representative model 20
Largest domain comprises residues Chain A: 8-14, 26-38, 42-88, 102-111
RMSD of all models in ensemble (Cα atoms) 2.5 Å

Protein domains shown as surfaces Representative models from each cluster
View in 3D View in 3D

Domain composition (NMRCore)
Domain number and colour code Residues Core Cumulative core
1 Chain A: 8-14, 26-38, 42-88, 102-111 74.0 % 74.0 %
2 Chain A: 92-101 9.6 % 83.7 %
3 Chain A: 15-20 5.8 % 89.4 %
4 Chain A: 23-25 2.9 % 92.3 %
5 Chain A: 39-41 2.9 % 95.2 %
6 Chain A: 112-114 2.9 % 98.1 %
7 Chain A: 21-22 1.9 % 100.0 %

Cluster identification (NMRClust)
Cluster number and colour code Representative Members
1 20 3, 6, 14, 16, 20
2 9 4, 5, 7, 9, 10
3 8 2, 8, 12, 13
4 18 15, 18
 
List of outliers (subfamily with one member): 1, 11, 17, 19