OLDERADO

OLDERADO cluster and domain composition for PDB entry 1P0G

Structure of Antimicrobial Peptide, HP (2-20) and its Analogues Derived from Helicobacter pylori, as Determined by 1H NMR Spectroscopy
Summary of Olderado results
Most representative model 5
Largest domain comprises residues Chain A: 3-8
RMSD of all models in ensemble (Cα atoms) 2.3 Å

Protein domains shown as surfaces Representative models from each cluster
View in 3D View in 3D

Domain composition (NMRCore)
Domain number and colour code Residues Core Cumulative core
1 Chain A: 3-8 42.9 % 42.9 %
2 Chain A: 9-12 28.6 % 71.4 %
3 Chain A: 13-16 28.6 % 100.0 %

Cluster identification (NMRClust)
Cluster number and colour code Representative Members
1 5 3, 4, 5, 6, 8, 13, 16, 17, 18, 19
2 14 10, 11, 12, 14, 15
3 20 1, 7, 20
 
List of outliers (subfamily with one member): 2, 9