PDBe 6b7m

X-ray diffraction
1.7Å resolution

Crystal structure of Legionella effector sdeD (lpg2509) in complex with Ubiquitin

Released:

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
hetero trimer (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
SdeD Chain: A
Molecule details ›
Chain: A
Length: 383 amino acids
Theoretical weight: 43.44 KDa
Source organism: Legionella pneumophila
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: NEW Q5ZSK8 (Residues: 17-397; Coverage: 96%)
Gene name: lpg2509
Ubiquitin Chains: B, C
Molecule details ›
Chains: B, C
Length: 76 amino acids
Theoretical weight: 8.58 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: NEW P0CG48 (Residues: 609-684; Coverage: 11%)
Gene name: UBC
Sequence domains: Ubiquitin family

Ligands and Environments

No bound ligands

No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: CHESS BEAMLINE F1
Spacegroup: P21
Unit cell:
a: 64.765Å b: 58.593Å c: 74.124Å
α: 90° β: 114.66° γ: 90°
R-values:
R R work R free
0.162 0.16 0.196
Expression system: Escherichia coli BL21(DE3)