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Crystal structure of RBBP4 bound to BCL11a peptide

X-ray diffraction
2.4Å resolution
PDB entry 5vtb coloured by chain, front view.
PDB entry 5vtb coloured by chain, side view.
PDB entry 5vtb coloured by chain, top view.
Source organism: Homo sapiens
Assembly composition:
hetero dimer (preferred)
Entry contents: 2 distinct polypeptide molecules

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Assemblies

Assembly 1 (preferred)
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Assembly Name: B-cell lymphoma/leukemia 11A and Histone-binding protein RBBP4
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Multimeric state: hetero dimer
Accessible surface area: 14317.58 Å2
Buried surface area: 2043.34 Å2
Dissociation area: 890.49 Å2
Dissociation energy (ΔGdiss): -0.94 kcal/mol
Dissociation entropy (TΔSdiss): 8.51 kcal/mol
Symmetry number: 1
PDBe Complex ID: PDB-CPX-170750

Macromolecules

Histone-binding protein RBBP4
Chain: A
Length: 432 amino acids
Theoretical weight: 48.46 KDa
Source organism: Homo sapiens
Expression system: unidentified baculovirus
UniProt:
  • Canonical: Q09028 (Residues: 1-425; Coverage: 100%)
Gene names: RBAP48, RBBP4
Pfam:
InterPro:
CATH: YVTN repeat-like/Quinoprotein amine dehydrogenase
Histone-binding protein RBBP4 in PDB entry 5vtb, assembly 1, front view.
Histone-binding protein RBBP4 in PDB entry 5vtb, assembly 1, side view.
Histone-binding protein RBBP4 in PDB entry 5vtb, assembly 1, top view.
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B-cell lymphoma/leukemia 11A
Chain: B
Length: 15 amino acids
Theoretical weight: 1.84 KDa
Source organism: Homo sapiens
Expression system: Not provided
UniProt:
  • Canonical: Q9H165 (Residues: 2-16; Coverage: 2%)
Gene names: BCL11A, CTIP1, EVI9, KIAA1809, ZNF856
B-cell lymphoma/leukemia 11A in PDB entry 5vtb, assembly 1, front view.
B-cell lymphoma/leukemia 11A in PDB entry 5vtb, assembly 1, side view.
B-cell lymphoma/leukemia 11A in PDB entry 5vtb, assembly 1, top view.
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