EC 2.7.7.6: DNA-directed RNA polymerase
Reaction catalysed:
Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1)
Systematic name:
Nucleoside-triphosphate:RNA nucleotidyltransferase (DNA-directed)
Alternative Name(s):
- C RNA formation factors
- C ribonucleic acid formation factors
- DNA-dependent RNA nucleotidyltransferase
- DNA-dependent RNA polymerase
- DNA-dependent ribonucleate nucleotidyltransferase
- Deoxyribonucleic acid-dependent ribonucleic acid polymerase
- RNA nucleotidyltransferase
- RNA nucleotidyltransferase (DNA-directed)
- RNA polymerase
- RNA polymerase I
- RNA polymerase II
- RNA polymerase III
- RNA transcriptase
- Ribonucleate nucleotidyltransferase
- Ribonucleate polymerase
- Ribonucleic acid nucleotidyltransferase
- Ribonucleic acid polymerase
- Ribonucleic acid transcriptase
- Ribonucleic polymerase
- Ribonucleic transcriptase
- Transcriptase
EC 3.6.4.12: DNA helicase
Reaction catalysed:
ATP + H(2)O = ADP + phosphate
Systematic name:
ATP phosphohydrolase (DNA helix unwinding)
Alternative Name(s):
- 3' to 5' DNA helicase
- 3'-5' DNA helicase
- 3'-5' PfDH
- 5' to 3' DNA helicase
- AvDH1
- BACH1 helicase
- BLM protein
- BRCA1-associated C-terminal helicase
- BcMCM
- CeWRN-1
- DNA helicase 120
- DNA helicase A
- DNA helicase E
- DNA helicase II
- DNA helicase III
- DNA helicase RECQL5'
- DNA helicase VI
- Dbp9p
- DmRECQ5
- DnaB
- DnaB helicase E1
- HHcsA
- HPif1
- Hel E
- Helicase DnaB
- Helicase HDH IV
- Helicase domain of bacteriophage T7 gene 4 protein helicase
- Hmi1p
- MCM helicase
- MCM protein
- MER3 helicase
- MER3 protein
- MPH1
- PDH120
- PIF1
- PcrA
- PcrA helicase
- PfDH A
- Pfh1p
- UvrD
EC 2.3.1.48: Histone acetyltransferase
Reaction catalysed:
Acetyl-CoA + [protein]-L-lysine = CoA + [protein]-N(6)-acetyl-L-lysine
Systematic name:
Acetyl-CoA:[protein]-L-lysine acetyltransferase
Alternative Name(s):
- Acetyl-CoA:histone acetyltransferase
- Histone acetokinase
- Histone acetylase
- Histone transacetylase
- Lysine acetyltransferase
- Nucleosome-histone acetyltransferase
- Protein lysine acetyltransferase
EC 2.7.7.48: RNA-directed RNA polymerase
Reaction catalysed:
Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1)
Systematic name:
Nucleoside-triphosphate:RNA nucleotidyltransferase (RNA-directed)
Alternative Name(s):
- 3D polymerase
- PB1 proteins
- PB2 proteins
- Phage f2 replicase
- Polymerase L
- Q-beta replicase
- RDRP
- RNA nucleotidyltransferase (RNA-directed)
- RNA replicase
- RNA synthetase
- RNA transcriptase
- RNA-dependent RNA polymerase
- RNA-dependent RNA replicase
- RNA-dependent ribonucleate nucleotidyltransferase
- Ribonucleic acid replicase
- Ribonucleic acid-dependent ribonucleate nucleotidyltransferase
- Ribonucleic acid-dependent ribonucleic acid polymerase
- Ribonucleic replicase
- Ribonucleic synthetase
- Transcriptase
GO terms
Biochemical function:
Biological process:
Cellular component:
Sequence families
Protein families (Pfam)
PF05793
Domain description:
Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)
Occurring in:
Occurring in:
PF02268
Domain description:
Transcription initiation factor IIA, gamma subunit, helical domain
Occurring in:
Occurring in:
InterPro annotations
IPR005570
Domain description:
DNA-directed RNA polymerases I, II, and III subunit RPABC3
Occurring in:
Occurring in:
IPR003166
Domain description:
Transcription factor TFIIE beta subunit, DNA-binding domain
Occurring in:
Occurring in:
IPR036575
Domain description:
Transcription elongation factor S-II, central domain superfamily
Occurring in:
Occurring in:
IPR015871
Domain description:
Transcription initiation factor IIA, gamma subunit, C-terminal
Occurring in:
Occurring in:
IPR015872
Domain description:
Transcription initiation factor IIA, gamma subunit, N-terminal
Occurring in:
Occurring in:
IPR006591
Domain description:
RNA polymerase archaeal subunit P/eukaryotic subunit RPABC4
Occurring in:
Occurring in:
IPR012164
Domain description:
DNA-directed RNA polymerase subunit/transcription factor S
Occurring in:
Occurring in:
IPR003617
Domain description:
Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type
Occurring in:
Occurring in:
IPR002853
Domain description:
Transcription initiation factor IIE subunit alpha, N-terminal
Occurring in:
Occurring in:
IPR029040
Domain description:
RNA polymerase subunit RPABC4/transcription elongation factor Spt4
Occurring in:
Occurring in:
IPR039747
Domain description:
DNA-directed RNA polymerases I, II, and III subunit RPABC4
Occurring in:
Occurring in:
IPR008193
Domain description:
DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved site
Occurring in:
Occurring in:
IPR009025
Domain description:
DNA-directed RNA polymerase, RBP11-like dimerisation domain
Occurring in:
Occurring in:
IPR019761
Domain description:
DNA-directed RNA polymerase M, 15kDa subunit, conserved site
Occurring in:
Occurring in:
IPR020708
Domain description:
DNA-directed RNA polymerase, 14-18kDa subunit, conserved site
Occurring in:
Occurring in:
IPR001514
Domain description:
DNA-directed RNA polymerase, 30-40kDa subunit, conserved site
Occurring in:
Occurring in:
IPR037033
Domain description:
DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily
Occurring in:
Occurring in:
IPR007120
Domain description:
DNA-directed RNA polymerase, subunit 2, hybrid-binding domain
Occurring in:
Occurring in:
Structure domains
CATH domains
3.30.310.10
Class:
Alpha Beta
Architecture:
2-Layer Sandwich
Topology:
TATA-Binding Protein
Homology:
TATA-Binding Protein
Occurring in:
3.30.1360.10
Class:
Alpha Beta
Architecture:
2-Layer Sandwich
Topology:
Gyrase A; domain 2
Homology:
RNA polymerase, RBP11-like subunit
Occurring in:
1.10.472.10
Class:
Mainly Alpha
Architecture:
Orthogonal Bundle
Topology:
Cyclin A; domain 1
Homology:
Cyclin-like
Occurring in:
2.40.50.140
Class:
Mainly Beta
Architecture:
Beta Barrel
Topology:
OB fold (Dihydrolipoamide Acetyltransferase, E2P)
Homology:
Nucleic acid-binding proteins
Occurring in:
2.30.18.10
Class:
Mainly Beta
Architecture:
Roll
Topology:
TATA box binding Protein, subunit D; domain 2
Homology:
Transcription factor IIA (TFIIA), beta-barrel domain
Occurring in:
1.10.287.190
Class:
Mainly Alpha
Architecture:
Orthogonal Bundle
Topology:
Helix Hairpins
Homology:
Transcription factor IIA gamma subunit, alpha-helical domain
Occurring in:
2.20.28.30
Class:
Mainly Beta
Architecture:
Single Sheet
Topology:
Rubrerythrin, domain 2
Homology:
RNA polymerase ii, chain L
Occurring in:
1.10.10.60
Class:
Mainly Alpha
Architecture:
Orthogonal Bundle
Topology:
Arc Repressor Mutant, subunit A
Homology:
Homeodomain-like
Occurring in:
3.30.1490.120
Class:
Alpha Beta
Architecture:
2-Layer Sandwich
Topology:
Dna Ligase; domain 1
Homology:
RNA polymerase Rpb7-like, N-terminal domain
Occurring in:
3.90.940.10
Class:
Alpha Beta
Architecture:
Alpha-Beta Complex
Topology:
Eukaryotic RPB6 RNA polymerase subunit
Homology:
Eukaryotic RPB6 RNA polymerase subunit
Occurring in:
3.90.940.20
Class:
Alpha Beta
Architecture:
Alpha-Beta Complex
Topology:
Eukaryotic RPB6 RNA polymerase subunit
Homology:
RPB5-like RNA polymerase subunit
Occurring in:
3.40.1340.10
Class:
Alpha Beta
Architecture:
3-Layer(aba) Sandwich
Topology:
Dna-directed Rna Polymerases I, Ii, And Iii 27 Kd Polypeptide; Chain: A; domain 1
Homology:
RNA polymerase, Rpb5, N-terminal domain
Occurring in:
1.20.1250.40
Class:
Mainly Alpha
Architecture:
Up-down Bundle
Topology:
Growth Hormone; Chain: A;
Homology:
Growth Hormone; Chain: A;
Occurring in: