PDBe 5hkh

X-ray diffraction
2.55Å resolution

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:

Structure analysis Details

Assembly composition:
hetero trimer (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
Ubiquitin-fold modifier 1 Chains: A, C
Molecule details ›
Chains: A, C
Length: 86 amino acids
Theoretical weight: 9.2 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:
  • Canonical: P61960 (Residues: 2-83; Coverage: 97%)
  • Best match: P61960-2 (Residues: 39-101)
Gene names: BM-002, C13orf20, UFM1
Sequence domains: Ubiquitin fold modifier 1 protein
Structure domains: Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1
Ubiquitin-like modifier-activating enzyme 5 Chain: B
Molecule details ›
Chain: B
Length: 9 amino acids
Theoretical weight: 1.07 KDa
Source organism: Homo sapiens
Expression system: Not provided
UniProt:
  • Canonical: Q9GZZ9 (Residues: 338-346; Coverage: 2%)
Gene names: UBA5, UBE1DC1

Ligands and Environments

No bound ligands

No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SLS BEAMLINE X06DA
Spacegroup: P3221
Unit cell:
a: 82.656Å b: 82.656Å c: 62.027Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.198 0.193 0.248
Expression systems:
  • Escherichia coli
  • Not provided