PDBe 5yij

X-ray diffraction
3.18Å resolution

Structure of a Legionella effector with substrates

Released:

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
hetero tetramer (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
SdeA Chain: A
Molecule details ›
Chain: A
Length: 968 amino acids
Theoretical weight: 109.79 KDa
Source organism: Legionella pneumophila
Expression system: Escherichia coli
UniProt:
  • Canonical: Q6RCR0 (Residues: 236-1195; Coverage: 64%)
Ubiquitin Chains: C, D, G
Molecule details ›
Chains: C, D, G
Length: 78 amino acids
Theoretical weight: 8.8 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:
  • Canonical: P0CG47 (Residues: 153-228; Coverage: 33%)
Gene name: UBB
Sequence domains: Ubiquitin family

Ligands and Environments

1 bound ligand:

No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRF BEAMLINE BL17U1
Spacegroup: C2
Unit cell:
a: 107.779Å b: 145.851Å c: 103.349Å
α: 90° β: 103.82° γ: 90°
R-values:
R R work R free
0.229 0.226 0.275
Expression system: Escherichia coli