PDBe 5vab

X-ray diffraction
1.7Å resolution

Crystal structure of ATXR5 PHD domain in complex with histone H3

Released:

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
ATXR5 PHD domain Chain: A
Molecule details ›
Chain: A
Length: 58 amino acids
Theoretical weight: 6.23 KDa
Source organism: Glycine max
Expression system: Escherichia coli
UniProt:
  • Canonical: I1N521 (Residues: 22-75; Coverage: 16%)
Gene names: 100775247, GLYMA_18G285900
Sequence domains: PHD-finger
Histone H3.1 Chain: F
Molecule details ›
Chain: F
Length: 11 amino acids
Theoretical weight: 1.31 KDa
Source organism: Homo sapiens
Expression system: Not provided
UniProt:
  • Canonical: P68431 (Residues: 2-11; Coverage: 7%)
Gene names: H3FA, H3FB, H3FC, H3FD, H3FF, H3FH, H3FI, H3FJ, H3FK, H3FL, HIST1H3A, HIST1H3B, HIST1H3C, HIST1H3D, HIST1H3E, HIST1H3F, HIST1H3G, HIST1H3H, HIST1H3I, HIST1H3J

Ligands and Environments

1 bound ligand:

No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: RIGAKU FR-D
Spacegroup: P4322
Unit cell:
a: 44.01Å b: 44.01Å c: 71.948Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.15 0.149 0.179
Expression systems:
  • Escherichia coli
  • Not provided