PDBe 5gie

X-ray diffraction
2.39Å resolution

Crystal structure of VDR in complex with DLAM-4P (P21 form)


Function and Biology Details

Structure analysis Details

Assembly composition:
hetero tetramer (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
Mediator of RNA polymerase II transcription subunit 1 Chains: C, E
Molecule details ›
Chains: C, E
Length: 10 amino acids
Theoretical weight: 1.21 KDa
Source organism: Homo sapiens
Expression system: Not provided
  • Canonical: Q15648 (Residues: 641-650; Coverage: 1%)
Gene names: ARC205, CRSP1, CRSP200, DRIP205, DRIP230, MED1, PBP, PPARBP, PPARGBP, RB18A, TRAP220, TRIP2
Vitamin D3 receptor Chains: A, D
Molecule details ›
Chains: A, D
Length: 256 amino acids
Theoretical weight: 29.09 KDa
Source organism: Rattus norvegicus
Expression system: Escherichia coli
  • Canonical: P13053 (Residues: 117-419; Coverage: 61%)
Gene names: Nr1i1, Vdr
Sequence domains: Ligand-binding domain of nuclear hormone receptor

Ligands and Environments

1 bound ligand:

No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SPRING-8 BEAMLINE BL41XU
Spacegroup: P21
Unit cell:
a: 65.364Å b: 42.077Å c: 96.802Å
α: 90° β: 94.55° γ: 90°
R R work R free
0.209 0.207 0.234
Expression systems:
  • Not provided
  • Escherichia coli