› 4y7p

X-ray diffraction
2.1Å resolution

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-161098 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Beta-lactamase-related domain-containing protein Chain: A
Molecule details ›
Chain: A
Length: 388 amino acids
Theoretical weight: 42.08 KDa
Source organism: Bacillus cereus
Expression system: Escherichia coli
UniProt:
  • Canonical: P94288 (Residues: 1-388; Coverage: 100%)
Gene name: adp
Sequence domains: Beta-lactamase
Structure domains: DD-peptidase/beta-lactamase superfamily

Ligands and Environments

1 bound ligand:
Ligand SCN 3 x SCN
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: RIGAKU MICROMAX-007
Spacegroup: P3221
Unit cell:
a: 104.019Å b: 104.019Å c: 98.535Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.176 0.174 0.219
Expression system: Escherichia coli

Quick links

Citations

5 citation in other articles

A broad-spectrum virus- and host-targeting peptide against respiratory viruses including influenza virus and SARS-CoV-2.
Zhao et al. (2020)
4 more

2 mentions without citation

Structural and computational analysis of peptide recognition mechanism of class-C type penicillin binding protein, alkaline D-peptidase from Bacillus cereus DF4-B.
Nakano et al. (2015)
1 more