› › Structure analysis

Crystal structure of the whole ribosomal complex.

X-ray diffraction
5.9Å resolution
PDB entry 4v4r coloured by chain, front view.
PDB entry 4v4r coloured by chain, side view.
PDB entry 4v4r coloured by chain, top view.
Source organisms:
Assembly composition:
hetero 56-mer (preferred)
Entry contents: 50 distinct polypeptide molecules
6 distinct RNA molecules

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Assemblies

Assembly 1 (preferred)
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Multimeric state: hetero 56-mer
Accessible surface area: 811499.68 Å2
Buried surface area: 228016.18 Å2
Dissociation area: 542.64 Å2
Dissociation energy (ΔGdiss): -3.46 kcal/mol
Dissociation entropy (TΔSdiss): 13.63 kcal/mol
Symmetry number: 1
PDBe Complex ID: PDB-CPX-215826

Macromolecules

Small ribosomal subunit protein uS2
Chain: AB
Length: 256 amino acids
Theoretical weight: 29.32 KDa
Source organism: Thermus thermophilus HB8
UniProt:
  • Canonical: P80371 (Residues: 1-256; Coverage: 100%)
Gene names: TTHA0861, rps2, rpsB
Pfam: Ribosomal protein S2
InterPro:
Small ribosomal subunit protein uS2 in PDB entry 4v4r, assembly 1, front view.
Small ribosomal subunit protein uS2 in PDB entry 4v4r, assembly 1, side view.
Small ribosomal subunit protein uS2 in PDB entry 4v4r, assembly 1, top view.
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Small ribosomal subunit protein uS3
Chain: AC
Length: 239 amino acids
Theoretical weight: 26.75 KDa
Source organism: Thermus thermophilus HB8
UniProt:
  • Canonical: P80372 (Residues: 1-239; Coverage: 100%)
Gene names: TTHA1686, rps3, rpsC
Pfam:
InterPro:
Small ribosomal subunit protein uS3 in PDB entry 4v4r, assembly 1, front view.
Small ribosomal subunit protein uS3 in PDB entry 4v4r, assembly 1, side view.
Small ribosomal subunit protein uS3 in PDB entry 4v4r, assembly 1, top view.
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Small ribosomal subunit protein uS4
Chain: AD
Length: 209 amino acids
Theoretical weight: 24.37 KDa
Source organism: Thermus thermophilus HB8
UniProt:
  • Canonical: P80373 (Residues: 1-209; Coverage: 100%)
Gene names: TTHA1665, rps4, rpsD
Pfam:
InterPro:
Small ribosomal subunit protein uS4 in PDB entry 4v4r, assembly 1, front view.
Small ribosomal subunit protein uS4 in PDB entry 4v4r, assembly 1, side view.
Small ribosomal subunit protein uS4 in PDB entry 4v4r, assembly 1, top view.
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Small ribosomal subunit protein uS5
Chain: AE
Length: 162 amino acids
Theoretical weight: 17.58 KDa
Source organism: Thermus thermophilus HB8
UniProt:
  • Canonical: Q5SHQ5 (Residues: 1-162; Coverage: 100%)
Gene names: TTHA1675, rpsE
Pfam:
InterPro:
Small ribosomal subunit protein uS5 in PDB entry 4v4r, assembly 1, front view.
Small ribosomal subunit protein uS5 in PDB entry 4v4r, assembly 1, side view.
Small ribosomal subunit protein uS5 in PDB entry 4v4r, assembly 1, top view.
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Small ribosomal subunit protein bS6
Chain: AF
Length: 101 amino acids
Theoretical weight: 11.99 KDa
Source organism: Thermus thermophilus HB8
UniProt:
  • Canonical: Q5SLP8 (Residues: 1-101; Coverage: 100%)
Gene names: TTHA0245, rpsF
Pfam: Ribosomal protein S6
InterPro:
Small ribosomal subunit protein bS6 in PDB entry 4v4r, assembly 1, front view.
Small ribosomal subunit protein bS6 in PDB entry 4v4r, assembly 1, side view.
Small ribosomal subunit protein bS6 in PDB entry 4v4r, assembly 1, top view.
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Small ribosomal subunit protein uS7
Chain: AG
Length: 156 amino acids
Theoretical weight: 18.05 KDa
Source organism: Thermus thermophilus HB8
UniProt:
  • Canonical: P17291 (Residues: 1-156; Coverage: 100%)
Gene names: TTHA1696, rps7, rpsG
Pfam: Ribosomal protein S7p/S5e
InterPro:
Small ribosomal subunit protein uS7 in PDB entry 4v4r, assembly 1, front view.
Small ribosomal subunit protein uS7 in PDB entry 4v4r, assembly 1, side view.
Small ribosomal subunit protein uS7 in PDB entry 4v4r, assembly 1, top view.
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Small ribosomal subunit protein uS8
Chain: AH
Length: 138 amino acids
Theoretical weight: 15.87 KDa
Source organism: Thermus thermophilus HB8
UniProt:
  • Canonical: P0DOY9 (Residues: 1-138; Coverage: 100%)
Gene names: TTHA1678, rpsH
Pfam: Ribosomal protein S8
InterPro:
Small ribosomal subunit protein uS8 in PDB entry 4v4r, assembly 1, front view.
Small ribosomal subunit protein uS8 in PDB entry 4v4r, assembly 1, side view.
Small ribosomal subunit protein uS8 in PDB entry 4v4r, assembly 1, top view.
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Small ribosomal subunit protein uS9
Chain: AI
Length: 128 amino acids
Theoretical weight: 14.43 KDa
Source organism: Thermus thermophilus HB8
UniProt:
  • Canonical: P80374 (Residues: 1-128; Coverage: 100%)
Gene names: TTHA1464, rps9, rpsI
Pfam: Ribosomal protein S9/S16
InterPro:
Small ribosomal subunit protein uS9 in PDB entry 4v4r, assembly 1, front view.
Small ribosomal subunit protein uS9 in PDB entry 4v4r, assembly 1, side view.
Small ribosomal subunit protein uS9 in PDB entry 4v4r, assembly 1, top view.
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Small ribosomal subunit protein uS10
Chain: AJ
Length: 105 amino acids
Theoretical weight: 11.95 KDa
Source organism: Thermus thermophilus HB8
UniProt:
  • Canonical: Q5SHN7 (Residues: 1-105; Coverage: 100%)
Gene names: TTHA1693, rpsJ
Pfam: Ribosomal protein S10p/S20e
InterPro:
Small ribosomal subunit protein uS10 in PDB entry 4v4r, assembly 1, front view.
Small ribosomal subunit protein uS10 in PDB entry 4v4r, assembly 1, side view.
Small ribosomal subunit protein uS10 in PDB entry 4v4r, assembly 1, top view.
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Small ribosomal subunit protein uS11
Chain: AK
Length: 129 amino acids
Theoretical weight: 13.74 KDa
Source organism: Thermus thermophilus HB8
UniProt:
  • Canonical: P80376 (Residues: 1-129; Coverage: 100%)
Gene names: TTHA1666, rps11, rpsK
Pfam: Ribosomal protein S11
InterPro:
Small ribosomal subunit protein uS11 in PDB entry 4v4r, assembly 1, front view.
Small ribosomal subunit protein uS11 in PDB entry 4v4r, assembly 1, side view.
Small ribosomal subunit protein uS11 in PDB entry 4v4r, assembly 1, top view.
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Small ribosomal subunit protein uS12
Chain: AL
Length: 135 amino acids
Theoretical weight: 14.92 KDa
Source organism: Thermus thermophilus HB8
UniProt:
  • Canonical: Q5SHN3 (Residues: 1-132; Coverage: 100%)
Gene names: TTHA1697, rpsL
Pfam: Ribosomal protein S12/S23
InterPro:
Small ribosomal subunit protein uS12 in PDB entry 4v4r, assembly 1, front view.
Small ribosomal subunit protein uS12 in PDB entry 4v4r, assembly 1, side view.
Small ribosomal subunit protein uS12 in PDB entry 4v4r, assembly 1, top view.
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Small ribosomal subunit protein uS13
Chain: AM
Length: 126 amino acids
Theoretical weight: 14.34 KDa
Source organism: Thermus thermophilus HB8
UniProt:
  • Canonical: P80377 (Residues: 1-126; Coverage: 100%)
Gene names: TTHA1667, rps13, rpsM
Pfam: Ribosomal protein S13/S18
InterPro:
Small ribosomal subunit protein uS13 in PDB entry 4v4r, assembly 1, front view.
Small ribosomal subunit protein uS13 in PDB entry 4v4r, assembly 1, side view.
Small ribosomal subunit protein uS13 in PDB entry 4v4r, assembly 1, top view.
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Small ribosomal subunit protein uS14
Chain: AN
Length: 61 amino acids
Theoretical weight: 7.16 KDa
Source organism: Thermus thermophilus HB8
UniProt:
  • Canonical: P0DOY6 (Residues: 1-61; Coverage: 100%)
Gene names: TTHA1679, rpsN, rpsZ
Pfam: Ribosomal protein S14p/S29e
InterPro:
Small ribosomal subunit protein uS14 in PDB entry 4v4r, assembly 1, front view.
Small ribosomal subunit protein uS14 in PDB entry 4v4r, assembly 1, side view.
Small ribosomal subunit protein uS14 in PDB entry 4v4r, assembly 1, top view.
Molecule details ›

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Small ribosomal subunit protein uS15
Chain: AO
Length: 89 amino acids
Theoretical weight: 10.58 KDa
Source organism: Thermus thermophilus HB8
UniProt:
  • Canonical: Q5SJ76 (Residues: 1-89; Coverage: 100%)
Gene names: TTHA1138, rpsO
Pfam: Ribosomal protein S15
InterPro:
Small ribosomal subunit protein uS15 in PDB entry 4v4r, assembly 1, front view.
Small ribosomal subunit protein uS15 in PDB entry 4v4r, assembly 1, side view.
Small ribosomal subunit protein uS15 in PDB entry 4v4r, assembly 1, top view.
Molecule details ›

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Small ribosomal subunit protein bS16
Chain: AP
Length: 88 amino acids
Theoretical weight: 10.41 KDa
Source organism: Thermus thermophilus HB8
UniProt:
  • Canonical: Q5SJH3 (Residues: 1-88; Coverage: 100%)
Gene names: TTHA1035, rpsP
Pfam: Ribosomal protein S16
InterPro:
Small ribosomal subunit protein bS16 in PDB entry 4v4r, assembly 1, front view.
Small ribosomal subunit protein bS16 in PDB entry 4v4r, assembly 1, side view.
Small ribosomal subunit protein bS16 in PDB entry 4v4r, assembly 1, top view.
Molecule details ›

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Small ribosomal subunit protein uS17
Chain: AQ
Length: 105 amino acids
Theoretical weight: 12.32 KDa
Source organism: Thermus thermophilus HB8
UniProt:
  • Canonical: P0DOY7 (Residues: 1-105; Coverage: 100%)
Gene names: TTHA1683, rpsQ
Pfam: Ribosomal protein S17
InterPro:
Small ribosomal subunit protein uS17 in PDB entry 4v4r, assembly 1, front view.
Small ribosomal subunit protein uS17 in PDB entry 4v4r, assembly 1, side view.
Small ribosomal subunit protein uS17 in PDB entry 4v4r, assembly 1, top view.
Molecule details ›

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Small ribosomal subunit protein bS18
Chain: AR
Length: 88 amino acids
Theoretical weight: 10.24 KDa
Source organism: Thermus thermophilus HB8
UniProt:
  • Canonical: Q5SLQ0 (Residues: 1-88; Coverage: 100%)
Gene names: TTHA0243, rpsR
Pfam: Ribosomal protein S18
InterPro:
Small ribosomal subunit protein bS18 in PDB entry 4v4r, assembly 1, front view.
Small ribosomal subunit protein bS18 in PDB entry 4v4r, assembly 1, side view.
Small ribosomal subunit protein bS18 in PDB entry 4v4r, assembly 1, top view.
Molecule details ›

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Small ribosomal subunit protein uS19
Chain: AS
Length: 93 amino acids
Theoretical weight: 10.61 KDa
Source organism: Thermus thermophilus HB8
UniProt:
  • Canonical: Q5SHP2 (Residues: 1-93; Coverage: 100%)
Gene names: TTHA1688, rpsS
Pfam: Ribosomal protein S19
InterPro:
Small ribosomal subunit protein uS19 in PDB entry 4v4r, assembly 1, front view.
Small ribosomal subunit protein uS19 in PDB entry 4v4r, assembly 1, side view.
Small ribosomal subunit protein uS19 in PDB entry 4v4r, assembly 1, top view.
Molecule details ›

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Small ribosomal subunit protein bS20
Chain: AT
Length: 106 amino acids
Theoretical weight: 11.72 KDa
Source organism: Thermus thermophilus HB8
UniProt:
  • Canonical: P80380 (Residues: 1-106; Coverage: 100%)
Gene names: TTHA1397, rps20, rpsT
Pfam: Ribosomal protein S20
InterPro:
Small ribosomal subunit protein bS20 in PDB entry 4v4r, assembly 1, front view.
Small ribosomal subunit protein bS20 in PDB entry 4v4r, assembly 1, side view.
Small ribosomal subunit protein bS20 in PDB entry 4v4r, assembly 1, top view.
Molecule details ›

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Small ribosomal subunit protein bTHX
Chain: AU
Length: 27 amino acids
Theoretical weight: 3.35 KDa
Source organism: Thermus thermophilus HB8
UniProt:
  • Canonical: Q5SIH3 (Residues: 1-27; Coverage: 100%)
Gene names: TTHA1396, rpsU
Pfam: 30S ribosomal protein Thx
InterPro:
Small ribosomal subunit protein bTHX in PDB entry 4v4r, assembly 1, front view.
Small ribosomal subunit protein bTHX in PDB entry 4v4r, assembly 1, side view.
Small ribosomal subunit protein bTHX in PDB entry 4v4r, assembly 1, top view.
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Peptide chain release factor 1
Chain: AY
Length: 354 amino acids
Theoretical weight: 40.15 KDa
Source organism: Thermus thermophilus HB8
Expression system: Escherichia coli
UniProt:
  • Canonical: P96077 (Residues: 1-354; Coverage: 100%)
Gene names: TTHA1940, prfA
Pfam:
InterPro:
Peptide chain release factor 1 in PDB entry 4v4r, assembly 1, front view.
Peptide chain release factor 1 in PDB entry 4v4r, assembly 1, side view.
Peptide chain release factor 1 in PDB entry 4v4r, assembly 1, top view.
Molecule details ›

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Large ribosomal subunit protein uL2
Chain: BD
Length: 173 amino acids
Theoretical weight: 18.65 KDa
Source organism: Thermus thermophilus
UniProt:
  • Canonical: Q5L3Z4 (Residues: 61-233; Coverage: 63%)
Gene names: GK0109, rplB
Pfam:
InterPro:
Large ribosomal subunit protein uL2 in PDB entry 4v4r, assembly 1, front view.
Large ribosomal subunit protein uL2 in PDB entry 4v4r, assembly 1, side view.
Large ribosomal subunit protein uL2 in PDB entry 4v4r, assembly 1, top view.
Molecule details ›

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Large ribosomal subunit protein uL3
Chain: BE
Length: 338 amino acids
Theoretical weight: 37.41 KDa
Source organism: Thermus thermophilus
UniProt:
  • Canonical: P20279 (Residues: 2-312, 313-338; Coverage: 100%)
Gene names: rpl3, rrnAC1611
Pfam: Ribosomal protein L3
InterPro:
Large ribosomal subunit protein uL3 in PDB entry 4v4r, assembly 1, front view.
Large ribosomal subunit protein uL3 in PDB entry 4v4r, assembly 1, side view.
Large ribosomal subunit protein uL3 in PDB entry 4v4r, assembly 1, top view.
Molecule details ›

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Large ribosomal subunit protein uL4
Chain: BF
Length: 246 amino acids
Theoretical weight: 26.44 KDa
Source organism: Thermus thermophilus
UniProt:
  • Canonical: P12735 (Residues: 1-246; Coverage: 100%)
Gene names: rpl4, rrnAC1610
Pfam: Ribosomal protein L4/L1 family
InterPro:
Large ribosomal subunit protein uL4 in PDB entry 4v4r, assembly 1, front view.
Large ribosomal subunit protein uL4 in PDB entry 4v4r, assembly 1, side view.
Large ribosomal subunit protein uL4 in PDB entry 4v4r, assembly 1, top view.
Molecule details ›

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Large ribosomal subunit protein uL5
Chain: BG
Length: 176 amino acids
Theoretical weight: 19.42 KDa
Source organism: Thermus thermophilus
UniProt:
  • Canonical: P14124 (Residues: 2-177; Coverage: 99%)
Gene names: rpl5, rrnAC1598
Pfam:
InterPro:
Large ribosomal subunit protein uL5 in PDB entry 4v4r, assembly 1, front view.
Large ribosomal subunit protein uL5 in PDB entry 4v4r, assembly 1, side view.
Large ribosomal subunit protein uL5 in PDB entry 4v4r, assembly 1, top view.
Molecule details ›

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Large ribosomal subunit protein uL6
Chain: BH
Length: 177 amino acids
Theoretical weight: 19.2 KDa
Source organism: Thermus thermophilus
UniProt:
  • Canonical: Q5L408 (Residues: 2-178; Coverage: 99%)
Gene names: GK0121, rplF
Pfam: Ribosomal protein L6
InterPro:
Large ribosomal subunit protein uL6 in PDB entry 4v4r, assembly 1, front view.
Large ribosomal subunit protein uL6 in PDB entry 4v4r, assembly 1, side view.
Large ribosomal subunit protein uL6 in PDB entry 4v4r, assembly 1, top view.
Molecule details ›

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Large ribosomal subunit protein bL9
Chain: BI
Length: 149 amino acids
Theoretical weight: 16.34 KDa
Source organism: Thermus thermophilus
UniProt:
  • Canonical: P02417 (Residues: 1-149; Coverage: 100%)
Gene name: rplI
Pfam:
InterPro:
Large ribosomal subunit protein bL9 in PDB entry 4v4r, assembly 1, front view.
Large ribosomal subunit protein bL9 in PDB entry 4v4r, assembly 1, side view.
Large ribosomal subunit protein bL9 in PDB entry 4v4r, assembly 1, top view.
Molecule details ›

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Large ribosomal subunit protein uL13
Chain: BN
Length: 145 amino acids
Theoretical weight: 16.25 KDa
Source organism: Thermus thermophilus
UniProt:
  • Canonical: P29198 (Residues: 1-145; Coverage: 100%)
Gene names: rpl13, rrnAC0065
Pfam: Ribosomal protein L13
InterPro:
Large ribosomal subunit protein uL13 in PDB entry 4v4r, assembly 1, front view.
Large ribosomal subunit protein uL13 in PDB entry 4v4r, assembly 1, side view.
Large ribosomal subunit protein uL13 in PDB entry 4v4r, assembly 1, top view.
Molecule details ›

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Large ribosomal subunit protein uL14
Chain: BO
Length: 122 amino acids
Theoretical weight: 13.37 KDa
Source organism: Thermus thermophilus
UniProt:
  • Canonical: Q5L413 (Residues: 1-122; Coverage: 100%)
Gene names: GK0116, rplN
Pfam: Ribosomal protein L14p/L23e
InterPro:
Large ribosomal subunit protein uL14 in PDB entry 4v4r, assembly 1, front view.
Large ribosomal subunit protein uL14 in PDB entry 4v4r, assembly 1, side view.
Large ribosomal subunit protein uL14 in PDB entry 4v4r, assembly 1, top view.
Molecule details ›

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Large ribosomal subunit protein uL15
Chain: BP
Length: 164 amino acids
Theoretical weight: 17.87 KDa
Source organism: Thermus thermophilus
UniProt:
  • Canonical: P12737 (Residues: 2-165; Coverage: 99%)
Gene names: rpl15, rrnAC1590
Pfam: Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
InterPro:
Large ribosomal subunit protein uL15 in PDB entry 4v4r, assembly 1, front view.
Large ribosomal subunit protein uL15 in PDB entry 4v4r, assembly 1, side view.
Large ribosomal subunit protein uL15 in PDB entry 4v4r, assembly 1, top view.
Molecule details ›

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50S ribosomal protein L16
Chain: BQ
Length: 138 amino acids
Theoretical weight: 15.31 KDa
Source organism: Thermus thermophilus
InterPro:
50S ribosomal protein L16 in PDB entry 4v4r, assembly 1, front view.
50S ribosomal protein L16 in PDB entry 4v4r, assembly 1, side view.
50S ribosomal protein L16 in PDB entry 4v4r, assembly 1, top view.
Molecule details ›

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Large ribosomal subunit protein uL18
Chain: BS
Length: 186 amino acids
Theoretical weight: 20.51 KDa
Source organism: Thermus thermophilus
UniProt:
  • Canonical: P14123 (Residues: 2-187; Coverage: 100%)
Gene names: rpl18, rrnAC1593
Pfam: Ribosomal large subunit proteins 60S L5, and 50S L18
InterPro: Large ribosomal subunit protein uL18 eukaryotic/archaeal
Large ribosomal subunit protein uL18 in PDB entry 4v4r, assembly 1, front view.
Large ribosomal subunit protein uL18 in PDB entry 4v4r, assembly 1, side view.
Large ribosomal subunit protein uL18 in PDB entry 4v4r, assembly 1, top view.
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Large ribosomal subunit protein eL24
Chain: BT
Length: 66 amino acids
Theoretical weight: 7.23 KDa
Source organism: Thermus thermophilus
UniProt:
  • Canonical: P14116 (Residues: 2-67; Coverage: 99%)
Gene names: rpl24e, rrnAC0104
Pfam: Ribosomal protein L24e
InterPro:
Large ribosomal subunit protein eL24 in PDB entry 4v4r, assembly 1, front view.
Large ribosomal subunit protein eL24 in PDB entry 4v4r, assembly 1, side view.
Large ribosomal subunit protein eL24 in PDB entry 4v4r, assembly 1, top view.
Molecule details ›

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Large ribosomal subunit protein uL22
Chain: BW
Length: 113 amino acids
Theoretical weight: 12.81 KDa
Source organism: Thermus thermophilus
UniProt:
  • Canonical: Q5SHP3 (Residues: 1-113; Coverage: 100%)
Gene names: TTHA1687, rplV
Pfam: Ribosomal protein L22p/L17e
InterPro:
Large ribosomal subunit protein uL22 in PDB entry 4v4r, assembly 1, front view.
Large ribosomal subunit protein uL22 in PDB entry 4v4r, assembly 1, side view.
Large ribosomal subunit protein uL22 in PDB entry 4v4r, assembly 1, top view.
Molecule details ›

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Large ribosomal subunit protein uL23
Chain: BX
Length: 84 amino acids
Theoretical weight: 9.48 KDa
Source organism: Thermus thermophilus
UniProt:
  • Canonical: P12732 (Residues: 2-85; Coverage: 99%)
Gene names: rpl23, rrnAC1609
Pfam: Ribosomal protein L23
InterPro:
Large ribosomal subunit protein uL23 in PDB entry 4v4r, assembly 1, front view.
Large ribosomal subunit protein uL23 in PDB entry 4v4r, assembly 1, side view.
Large ribosomal subunit protein uL23 in PDB entry 4v4r, assembly 1, top view.
Molecule details ›

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Large ribosomal subunit protein uL24
Chain: BY
Length: 119 amino acids
Theoretical weight: 13.54 KDa
Source organism: Thermus thermophilus
UniProt:
  • Canonical: P10972 (Residues: 2-120; Coverage: 99%)
Gene names: rpl24, rrnAC1601
Pfam:
InterPro:
Large ribosomal subunit protein uL24 in PDB entry 4v4r, assembly 1, front view.
Large ribosomal subunit protein uL24 in PDB entry 4v4r, assembly 1, side view.
Large ribosomal subunit protein uL24 in PDB entry 4v4r, assembly 1, top view.
Molecule details ›

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Large ribosomal subunit protein bL25
Chain: BZ
Length: 253 amino acids
Theoretical weight: 27 KDa
Source organism: Thermus thermophilus
UniProt:
  • Canonical: Q9RX88 (Residues: 1-237; Coverage: 100%)
Gene names: DR_0427, ctc, rplY
Pfam:
InterPro:
Large ribosomal subunit protein bL25 in PDB entry 4v4r, assembly 1, front view.
Large ribosomal subunit protein bL25 in PDB entry 4v4r, assembly 1, side view.
Large ribosomal subunit protein bL25 in PDB entry 4v4r, assembly 1, top view.
Molecule details ›

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Large ribosomal subunit protein bL17
Chain: BR
Length: 118 amino acids
Theoretical weight: 13.75 KDa
Source organism: Thermus thermophilus
UniProt:
  • Canonical: Q9Z9H5 (Residues: 1-118; Coverage: 100%)
Gene names: TTHA1663, rpl17, rplQ
Pfam: Ribosomal protein L17
InterPro:
Large ribosomal subunit protein bL17 in PDB entry 4v4r, assembly 1, front view.
Large ribosomal subunit protein bL17 in PDB entry 4v4r, assembly 1, side view.
Large ribosomal subunit protein bL17 in PDB entry 4v4r, assembly 1, top view.
Molecule details ›

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Large ribosomal subunit protein bL20
Chain: BU
Length: 118 amino acids
Theoretical weight: 13.99 KDa
Source organism: Thermus thermophilus
UniProt:
  • Canonical: Q9RSW7 (Residues: 1-118; Coverage: 100%)
Gene names: DR_2004, rplT
Pfam: Ribosomal protein L20
InterPro:
Large ribosomal subunit protein bL20 in PDB entry 4v4r, assembly 1, front view.
Large ribosomal subunit protein bL20 in PDB entry 4v4r, assembly 1, side view.
Large ribosomal subunit protein bL20 in PDB entry 4v4r, assembly 1, top view.
Molecule details ›

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Large ribosomal subunit protein bL21
Chain: BV
Length: 100 amino acids
Theoretical weight: 11.17 KDa
Source organism: Thermus thermophilus
UniProt:
  • Canonical: Q9RY64 (Residues: 1-100; Coverage: 100%)
Gene names: DR_0086, rplU
Pfam: Ribosomal prokaryotic L21 protein
InterPro:
Large ribosomal subunit protein bL21 in PDB entry 4v4r, assembly 1, front view.
Large ribosomal subunit protein bL21 in PDB entry 4v4r, assembly 1, side view.
Large ribosomal subunit protein bL21 in PDB entry 4v4r, assembly 1, top view.
Molecule details ›

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Large ribosomal subunit protein uL29
Chain: B2
Length: 70 amino acids
Theoretical weight: 7.76 KDa
Source organism: Thermus thermophilus
UniProt:
  • Canonical: P10971 (Residues: 2-71; Coverage: 99%)
Gene names: rpl29, rrnAC1604
Pfam: Ribosomal L29 protein
InterPro:
Large ribosomal subunit protein uL29 in PDB entry 4v4r, assembly 1, front view.
Large ribosomal subunit protein uL29 in PDB entry 4v4r, assembly 1, side view.
Large ribosomal subunit protein uL29 in PDB entry 4v4r, assembly 1, top view.
Molecule details ›

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Large ribosomal subunit protein uL30
Chain: B3
Length: 60 amino acids
Theoretical weight: 6.8 KDa
Source organism: Thermus thermophilus
UniProt:
  • Canonical: Q5SHQ6 (Residues: 1-60; Coverage: 100%)
Gene names: TTHA1674, rpmD
Pfam: Ribosomal protein L30p/L7e
InterPro:
Large ribosomal subunit protein uL30 in PDB entry 4v4r, assembly 1, front view.
Large ribosomal subunit protein uL30 in PDB entry 4v4r, assembly 1, side view.
Large ribosomal subunit protein uL30 in PDB entry 4v4r, assembly 1, top view.
Molecule details ›

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Large ribosomal subunit protein bL27
Chain: B0
Length: 91 amino acids
Theoretical weight: 9.61 KDa
Source organism: Thermus thermophilus
UniProt:
  • Canonical: Q9RY65 (Residues: 1-91; Coverage: 100%)
Gene names: DR_0085, rpmA
Pfam: Ribosomal L27 protein
InterPro:
Large ribosomal subunit protein bL27 in PDB entry 4v4r, assembly 1, front view.
Large ribosomal subunit protein bL27 in PDB entry 4v4r, assembly 1, side view.
Large ribosomal subunit protein bL27 in PDB entry 4v4r, assembly 1, top view.
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Large ribosomal subunit protein bL31
Chain: B4
Length: 73 amino acids
Theoretical weight: 8.6 KDa
Source organism: Thermus thermophilus
UniProt:
  • Canonical: Q9RW44 (Residues: 1-73; Coverage: 100%)
Gene names: DR_0825, rpmE
Pfam: Ribosomal protein L31
InterPro:
Large ribosomal subunit protein bL31 in PDB entry 4v4r, assembly 1, front view.
Large ribosomal subunit protein bL31 in PDB entry 4v4r, assembly 1, side view.
Large ribosomal subunit protein bL31 in PDB entry 4v4r, assembly 1, top view.
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Large ribosomal subunit protein bL32
Chain: B5
Length: 60 amino acids
Theoretical weight: 6.81 KDa
Source organism: Thermus thermophilus
UniProt:
  • Canonical: P49228 (Residues: 1-60; Coverage: 100%)
Gene names: DR_2366, rpmF
Pfam: Ribosomal L32p protein family
InterPro:
Large ribosomal subunit protein bL32 in PDB entry 4v4r, assembly 1, front view.
Large ribosomal subunit protein bL32 in PDB entry 4v4r, assembly 1, side view.
Large ribosomal subunit protein bL32 in PDB entry 4v4r, assembly 1, top view.
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Large ribosomal subunit protein bL33
Chain: B6
Length: 82 amino acids
Theoretical weight: 9.29 KDa
Source organism: Thermus thermophilus
UniProt:
  • Canonical: Q9RSS4 (Residues: 1-55; Coverage: 100%)
Gene names: DR_2049, rpmG
Pfam: Ribosomal protein L33
InterPro:
Large ribosomal subunit protein bL33 in PDB entry 4v4r, assembly 1, front view.
Large ribosomal subunit protein bL33 in PDB entry 4v4r, assembly 1, side view.
Large ribosomal subunit protein bL33 in PDB entry 4v4r, assembly 1, top view.
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Large ribosomal subunit protein bL34
Chain: B7
Length: 47 amino acids
Theoretical weight: 5.63 KDa
Source organism: Thermus thermophilus
UniProt:
  • Canonical: Q9RSH2 (Residues: 1-47; Coverage: 100%)
Gene names: DR_2152, rpmH
Pfam: Ribosomal protein L34
InterPro:
Large ribosomal subunit protein bL34 in PDB entry 4v4r, assembly 1, front view.
Large ribosomal subunit protein bL34 in PDB entry 4v4r, assembly 1, side view.
Large ribosomal subunit protein bL34 in PDB entry 4v4r, assembly 1, top view.
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Large ribosomal subunit protein bL35
Chain: B8
Length: 64 amino acids
Theoretical weight: 7.26 KDa
Source organism: Thermus thermophilus
UniProt:
  • Canonical: Q9RSW6 (Residues: 1-64; Coverage: 97%)
Gene names: DR_2005, rpmI
Pfam: Ribosomal protein L35
InterPro:
Large ribosomal subunit protein bL35 in PDB entry 4v4r, assembly 1, front view.
Large ribosomal subunit protein bL35 in PDB entry 4v4r, assembly 1, side view.
Large ribosomal subunit protein bL35 in PDB entry 4v4r, assembly 1, top view.
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Large ribosomal subunit protein bL36
Chain: B9
Length: 36 amino acids
Theoretical weight: 4.27 KDa
Source organism: Thermus thermophilus
UniProt:
  • Canonical: Q9RSK0 (Residues: 1-36; Coverage: 97%)
Gene names: DR_2124, rpmJ
Pfam: Ribosomal protein L36
InterPro:
Large ribosomal subunit protein bL36 in PDB entry 4v4r, assembly 1, front view.
Large ribosomal subunit protein bL36 in PDB entry 4v4r, assembly 1, side view.
Large ribosomal subunit protein bL36 in PDB entry 4v4r, assembly 1, top view.
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Large ribosomal subunit protein uL11
Chain: BK
Length: 141 amino acids
Theoretical weight: 15.11 KDa
Source organism: Thermus thermophilus
UniProt:
  • Canonical: P29395 (Residues: 1-141; Coverage: 100%)
Gene names: TM_0454, rplK
Pfam:
InterPro:
Large ribosomal subunit protein uL11 in PDB entry 4v4r, assembly 1, front view.
Large ribosomal subunit protein uL11 in PDB entry 4v4r, assembly 1, side view.
Large ribosomal subunit protein uL11 in PDB entry 4v4r, assembly 1, top view.
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RNA chain AA
Name: 16S ribosomal RNA
Representative chains: AA
Length: 1522 nucleotides
Theoretical weight: 493.96 KDa
Rfam: Bacterial small subunit ribosomal RNA
16S ribosomal RNA in PDB entry 4v4r, assembly 1, front view.
16S ribosomal RNA in PDB entry 4v4r, assembly 1, side view.
16S ribosomal RNA in PDB entry 4v4r, assembly 1, top view.
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RNA chain AV
Name: P-site tRNA (Phe)
Representative chains: AV
Length: 76 nucleotides
Theoretical weight: 24.52 KDa
Rfam: tRNA
P-site tRNA (Phe) in PDB entry 4v4r, assembly 1, front view.
P-site tRNA (Phe) in PDB entry 4v4r, assembly 1, side view.
P-site tRNA (Phe) in PDB entry 4v4r, assembly 1, top view.
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RNA chain AW
Name: E-site tRNA (Phe)
Representative chains: AW
Length: 76 nucleotides
Theoretical weight: 24.74 KDa
Rfam: tRNA
E-site tRNA (Phe) in PDB entry 4v4r, assembly 1, front view.
E-site tRNA (Phe) in PDB entry 4v4r, assembly 1, side view.
E-site tRNA (Phe) in PDB entry 4v4r, assembly 1, top view.
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RNA chain AX
Name: 5'-R(*AP*UP*GP*UP*UP*CP*UP*AP*GP*UP*AP*CP*AP*AP*UP*AP*AP*U)-3'
Representative chains: AX
Length: 18 nucleotides
Theoretical weight: 5.7 KDa
5'-R(*AP*UP*GP*UP*UP*CP*UP*AP*GP*UP*AP*CP*AP*AP*UP*AP*AP*U)-3' in PDB entry 4v4r, assembly 1, front view.
5'-R(*AP*UP*GP*UP*UP*CP*UP*AP*GP*UP*AP*CP*AP*AP*UP*AP*AP*U)-3' in PDB entry 4v4r, assembly 1, side view.
5'-R(*AP*UP*GP*UP*UP*CP*UP*AP*GP*UP*AP*CP*AP*AP*UP*AP*AP*U)-3' in PDB entry 4v4r, assembly 1, top view.
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RNA chain BB
Name: 5S ribosomal RNA
Representative chains: BB
Length: 123 nucleotides
Theoretical weight: 39.85 KDa
Rfam: 5S ribosomal RNA
5S ribosomal RNA in PDB entry 4v4r, assembly 1, front view.
5S ribosomal RNA in PDB entry 4v4r, assembly 1, side view.
5S ribosomal RNA in PDB entry 4v4r, assembly 1, top view.
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RNA chain BA
Name: 23S ribosomal RNA
Representative chains: BA
Length: 2916 nucleotides
Theoretical weight: 948.28 KDa
Rfam: Bacterial large subunit ribosomal RNA
23S ribosomal RNA in PDB entry 4v4r, assembly 1, front view.
23S ribosomal RNA in PDB entry 4v4r, assembly 1, side view.
23S ribosomal RNA in PDB entry 4v4r, assembly 1, top view.
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