› 4s24

X-ray diffraction
1.7Å resolution

1.7 Angstrom Crystal Structure of of Putative Modulator of Drug Activity (apo- form) from Yersinia pestis CO92

Released:
DOI: 10.2210/pdb4s24/pdb
PDB entry 4s24 coloured by chain, front view.
PDB entry 4s24 coloured by chain, side view.
PDB entry 4s24 coloured by chain, top view.
Source organism: Yersinia pestis CO92
Entry authors: Minasov G, Shuvalova L, Dubrovska I, Flores K, Grimshaw S, Kwon K, Anderson WF, Center for Structural Genomics of Infectious Diseases (CSGID)

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-104525 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Modulator of drug activity Chain: A
Molecule details ›
Chain: A
Length: 197 amino acids
Theoretical weight: 22.61 KDa
Source organism: Yersinia pestis CO92
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: A0A0H2W7Q5 (Residues: 1-194; Coverage: 100%)
Gene names: YPO0670, mda66, mdaB
Sequence domains: Flavodoxin-like fold
Structure domains: Rossmann fold

Ligands and Environments

4 bound ligands:
Ligand SO4 1 x SO4
Ligand PGE 1 x PGE
Ligand PEG 2 x PEG
Ligand 1PE 1 x 1PE
1 modified residue:
Ligand MSE 7 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 21-ID-G
Spacegroup: P6122
Unit cell:
a: 72.046Å b: 72.046Å c: 166.766Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.149 0.149 0.166
Expression system: Escherichia coli BL21(DE3)

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