› 4qey

X-ray diffraction
2.52Å resolution

Crystal structure of a DUF4425 family protein (BACOVA_05332) from Bacteroides ovatus ATCC 8483 at 2.52 A resolution

Released:
DOI: 10.2210/pdb4qey/pdb
PDB entry 4qey coloured by chain, front view.
PDB entry 4qey coloured by chain, side view.
PDB entry 4qey coloured by chain, top view.
Source organism: Bacteroides ovatus ATCC 8483
Entry author: Joint Center for Structural Genomics (JCSG)

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domain:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-108360 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Lipoprotein Chains: A, B, C, D, E, F, G, H, I, J
Molecule details ›
Chains: A, B, C, D, E, F, G, H, I, J
Length: 132 amino acids
Theoretical weight: 14.28 KDa
Source organism: Bacteroides ovatus ATCC 8483
Expression system: Escherichia coli
UniProt:
  • Canonical: A7M5D7 (Residues: 25-155; Coverage: 85%)
Gene name: BACOVA_05332
Sequence domains: PLAT/LH2 and C2-like Ca2+-binding lipoprotein
Structure domains: Lipoxygenase-1

Ligands and Environments

3 bound ligands:
Ligand PEG 6 x PEG
Ligand EDO 28 x EDO
Ligand PGE 1 x PGE
1 modified residue:
Ligand MSE 20 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRL BEAMLINE BL11-1
Spacegroup: P21
Unit cell:
a: 90.59Å b: 101.34Å c: 91.42Å
α: 90° β: 107.91° γ: 90°
R-values:
R R work R free
0.198 0.196 0.221
Expression system: Escherichia coli

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