› 4jwo

X-ray diffraction
1.6Å resolution

The crystal structure of a possible phosphate binding protein from Planctomyces limnophilus DSM 3776

Released:
DOI: 10.2210/pdb4jwo/pdb
PDB entry 4jwo coloured by chain, front view.
PDB entry 4jwo coloured by chain, side view.
PDB entry 4jwo coloured by chain, top view.
Source organism: Planctopirus limnophila DSM 3776
Entry authors: Tan K, Gu M, Endres M, Joachimiak A, Midwest Center for Structural Genomics (MCSG)

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-112741 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Phosphate-binding protein Chain: A
Molecule details ›
Chain: A
Length: 341 amino acids
Theoretical weight: 36.97 KDa
Source organism: Planctopirus limnophila DSM 3776
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: D5SW38 (Residues: 1-338; Coverage: 100%)
Gene name: Plim_1490
Sequence domains: PBP superfamily domain
Structure domains: Periplasmic binding protein-like II

Ligands and Environments

4 bound ligands:
Ligand SO4 3 x SO4
Ligand FMT 1 x FMT
Ligand PEG 2 x PEG
Ligand EDO 1 x EDO
1 modified residue:
Ligand MSE 5 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 19-ID
Spacegroup: P61
Unit cell:
a: 87.158Å b: 87.158Å c: 75.536Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.173 0.172 0.195
Expression system: Escherichia coli BL21(DE3)

Quick links