PDBe 4j79

X-ray diffraction
1.56Å resolution

Crystal structure of beta'-COP/PEDVspike complex

Released:

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
Spike glycoprotein Chain: B
Molecule details ›
Chain: B
Length: 6 amino acids
Theoretical weight: 741 Da
Source organism: Porcine epidemic diarrhea virus
Expression system: Not provided
UniProt:
  • Canonical: Q91AV1 (Residues: 1378-1383; Coverage: 0%)
Gene names: 2, S
Coatomer subunit beta' Chain: A
Molecule details ›
Chain: A
Length: 301 amino acids
Theoretical weight: 34.31 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P41811 (Residues: 1-301; Coverage: 34%)
Gene names: G2827, SEC27, YGL137W
Sequence domains: WD domain, G-beta repeat
Structure domains: YVTN repeat-like/Quinoprotein amine dehydrogenase

Ligands and Environments

No bound ligands

No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 24-ID-E
Spacegroup: C2
Unit cell:
a: 75.1Å b: 51.18Å c: 85.25Å
α: 90° β: 101.75° γ: 90°
R-values:
R R work R free
0.166 0.165 0.196
Expression system: Not provided