› 4eek

X-ray diffraction
1.6Å resolution

Crystal structure of HAD FAMILY HYDROLASE DR_1622 from Deinococcus radiodurans R1 (TARGET EFI-501256) With bound phosphate and sodium

Released:
DOI: 10.2210/pdb4eek/pdb
PDB entry 4eek coloured by chain, front view.
PDB entry 4eek coloured by chain, side view.
PDB entry 4eek coloured by chain, top view.
Source organism: Deinococcus radiodurans
Entry authors: Patskovsky Y, Toro R, Bhosle R, Hillerich B, Seidel RD, Washington E, Scott Glenn A, Chowdhury S, Evans B, Hammonds J, Zencheck WD, Imker HJ, Gerlt JA, Allen KN, Dunaway-Mariano D, Almo SC, Enzyme Function Initiative (EFI)

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assemblies composition:
monomeric (preferred)
homo dimer
Assembly name:
PDBe Complex ID:
PDB-CPX-193275 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Beta-phosphoglucomutase-related protein Chain: A
Molecule details ›
Chain: A
Length: 259 amino acids
Theoretical weight: 27.54 KDa
Source organism: Deinococcus radiodurans
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: Q9RTX8 (Residues: 1-237; Coverage: 100%)
Gene name: DR_1622
Sequence domains: haloacid dehalogenase-like hydrolase
Structure domains:

Ligands and Environments

2 bound ligands:
Ligand PO4 1 x PO4
Ligand NA 1 x NA
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: NSLS BEAMLINE X29A
Spacegroup: P6522
Unit cell:
a: 55.537Å b: 55.537Å c: 273.094Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.188 0.187 0.225
Expression system: Escherichia coli BL21(DE3)

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