4c5x Citations

Structural insights into how 5-hydroxymethylation influences transcription factor binding.

Chem. Commun. (Camb.) (2013)
Related entries: 4c64, 4c63

Cited: 13 times
EuropePMC logo PMID: 24287551

Abstract

Transcription factor binding and high resolution crystallographic studies (1.3 Å) of Dickerson-Drew duplexes with cytosine, methylcytosine and hydroxymethylcytosine bases provide evidence that C-5 cytosine modifications could regulate transcription by context dependent effects on DNA transcription factor interactions.

Reviews - 4c5x mentioned but not cited (1)

  1. Making the bend: DNA tertiary structure and protein-DNA interactions. Harteis S, Schneider S. Int J Mol Sci 15 12335-12363 (2014)


Reviews citing this publication (4)

  1. Epigenetic Modifications of Cytosine: Biophysical Properties, Regulation, and Function in Mammalian DNA. Hardwick JS, Lane AN, Brown T. Bioessays 40 (2018)
  2. Recognition of Oxidized 5-Methylcytosine Derivatives in DNA by Natural and Engineered Protein Scaffolds. Muñoz-López Á, Summerer D. Chem Rec 18 105-116 (2018)
  3. TET proteins in natural and induced differentiation. Scott-Browne JP, Lio CJ, Rao A. Curr. Opin. Genet. Dev. 46 202-208 (2017)
  4. TALEored Epigenetics: A DNA-Binding Scaffold for Programmable Epigenome Editing and Analysis. Kubik G, Summerer D. Chembiochem 17 975-980 (2016)

Articles citing this publication (8)

  1. Polymerase synthesis of photocaged DNA resistant against cleavage by restriction endonucleases. Vaníková Z, Hocek M. Angew Chem Int Ed Engl 53 6734-6737 (2014)
  2. 5-Formylcytosine does not change the global structure of DNA. Hardwick JS, Ptchelkine D, El-Sagheer AH, Tear I, Singleton D, Phillips SEV, Lane AN, Brown T. Nat Struct Mol Biol 24 544-552 (2017)
  3. Selective recognition of N4-methylcytosine in DNA by engineered transcription-activator-like effectors. Rathi P, Maurer S, Summerer D. Philos. Trans. R. Soc. Lond., B, Biol. Sci. 373 (2018)
  4. Adaptive resolution simulation of oligonucleotides. Netz PA, Potestio R, Kremer K. J Chem Phys 145 234101 (2016)
  5. Modeling Functional Motions of Biological Systems by Customized Natural Moves. Demharter S, Knapp B, Deane CM, Minary P. Biophys J 111 710-721 (2016)
  6. Electron transfer characteristics of 2'-deoxy-2'-fluoro-arabinonucleic acid, a nucleic acid with enhanced chemical stability. Teo RD, Terai K, Migliore A, Beratan DN. Phys Chem Chem Phys 20 26063-26067 (2018)
  7. In silico structural modeling of multiple epigenetic marks on DNA. Krawczyk K, Demharter S, Knapp B, Deane CM, Minary P. Bioinformatics 34 41-48 (2018)
  8. Water-bridged hydrogen bond formation between 5-hydroxylmethylcytosine (5-hmC) and its 3'-neighbouring bases in A- and B-form DNA duplexes. Wang R, Ranganathan SV, Valsangkar VA, Magliocco SM, Shen F, Chen A, Sheng J. Chem Commun (Camb) 51 16389-16392 (2015)