PDBe 4i6n

X-ray diffraction
1.7Å resolution

Crystal structure of Trichinella spiralis UCH37 catalytic domain bound to Ubiquitin vinyl methyl ester

Released:

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
Putative ubiquitin carboxyl-hydrolase ubh-4 Chains: A, C
Molecule details ›
Chains: A, C
Length: 231 amino acids
Theoretical weight: 26.27 KDa
Source organism: Trichinella spiralis
Expression system: Escherichia coli
UniProt:
  • Canonical: E5S6X1 (Residues: 634-640, 641-793, 794-812; Coverage: 20%)
Gene name: Tsp_07066
Structure domains: Peptidase C12, ubiquitin carboxyl-terminal hydrolase
Ubiquitin Chains: B, D
Molecule details ›
Chains: B, D
Length: 75 amino acids
Theoretical weight: 8.57 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:
  • Canonical: P0CG48 (Residues: 609-683; Coverage: 11%)
Gene name: UBC
Sequence domains: Ubiquitin family
Structure domains: Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1

Ligands and Environments

3 bound ligands:

1 modified residue:

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 23-ID-B
Spacegroup: C2
Unit cell:
a: 171.202Å b: 55.759Å c: 73.868Å
α: 90° β: 113.42° γ: 90°
R-values:
R R work R free
0.176 0.174 0.211
Expression system: Escherichia coli