PDBe 4h9s

X-ray diffraction
2.6Å resolution

Complex structure 6 of DAXX/H3.3(sub7)/H4

Released:
Source organism: Homo sapiens
Entry authors: Elsasser SJ, Huang H, Lewis PW, Chin JW, Allis DC, Patel DJ

Function and Biology Details

Structure analysis Details

Assemblies composition:
hetero trimer (preferred)
hetero hexamer
Entry contents:
3 distinct polypeptide molecules
Macromolecules (3 distinct):
Histone H3.3 Chains: A, B
Molecule details ›
Chains: A, B
Length: 135 amino acids
Theoretical weight: 15.33 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:
  • Canonical: NEW P84243 (Residues: 2-136; Coverage: 99%)
Gene names: H3.3A, H3.3B, H3F3, H3F3A, H3F3B, PP781
Structure domains: Histone, subunit A
Histone H4 Chains: C, D
Molecule details ›
Chains: C, D
Length: 83 amino acids
Theoretical weight: 9.41 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:
  • Canonical: NEW P62805 (Residues: 21-103; Coverage: 81%)
Gene names: H4/A, H4/B, H4/C, H4/D, H4/E, H4/G, H4/H, H4/I, H4/J, H4/K, H4/M, H4/N, H4/O, H4F2, H4FA, H4FB, H4FC, H4FD, H4FE, H4FG, H4FH, H4FI, H4FJ, H4FK, H4FM, H4FN, H4FO, HIST1H4A, HIST1H4B, HIST1H4C, HIST1H4D, HIST1H4E, HIST1H4F, HIST1H4H, HIST1H4I, HIST1H4J, HIST1H4K, HIST1H4L, HIST2H4, HIST2H4A, HIST2H4B, HIST4H4
Structure domains: Histone, subunit A
Death domain-associated protein 6 Chains: E, F
Molecule details ›
Chains: E, F
Length: 216 amino acids
Theoretical weight: 25.33 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:
  • Canonical: NEW Q9UER7 (Residues: 183-398; Coverage: 29%)
Gene names: BING2, DAP6, DAXX
Structure domains: Methane Monooxygenase Hydroxylase; Chain G, domain 1

Ligands and Environments

1 bound ligand:

No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: NSLS BEAMLINE X29A
Spacegroup: P212121
Unit cell:
a: 96.397Å b: 99.165Å c: 100.611Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.198 0.195 0.25
Expression system: Escherichia coli