› 4h0c

X-ray diffraction
1.62Å resolution

Crystal structure of phospholipase/Carboxylesterase from Dyadobacter fermentans DSM 18053

Released:
DOI: 10.2210/pdb4h0c/pdb
PDB entry 4h0c coloured by chain, front view.
PDB entry 4h0c coloured by chain, side view.
PDB entry 4h0c coloured by chain, top view.
Source organism: Dyadobacter fermentans DSM 18053
Entry authors: Chang C, Holowicki J, Clancy S, Joachimiak A, Midwest Center for Structural Genomics (MCSG)

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-111641 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Phospholipase/carboxylesterase/thioesterase domain-containing protein Chains: A, B
Molecule details ›
Chains: A, B
Length: 210 amino acids
Theoretical weight: 22.86 KDa
Source organism: Dyadobacter fermentans DSM 18053
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: C6VYE5 (Residues: 1-207; Coverage: 100%)
Gene name: Dfer_0355
Sequence domains: Phospholipase/Carboxylesterase
Structure domains: alpha/beta hydrolase

Ligands and Environments

3 bound ligands:
Ligand CIT 2 x CIT
Ligand NA 2 x NA
Ligand GOL 1 x GOL
1 modified residue:
Ligand MSE 10 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 19-ID
Spacegroup: P1
Unit cell:
a: 40.157Å b: 40.251Å c: 67.256Å
α: 72.77° β: 78.37° γ: 76.09°
R-values:
R R work R free
0.139 0.136 0.194
Expression system: Escherichia coli BL21(DE3)

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