PDBe 4gwk

X-ray diffraction
1.53Å resolution

Crystal structure of 6-phosphogluconate dehydrogenase complexed with 3-phosphoglyceric acid


Function and Biology Details

Structure analysis Details

Assemblies composition:
monomeric (preferred)
homo dimer
Entry contents:
1 distinct polypeptide molecule
6-phosphogluconate dehydrogenase, decarboxylating Chain: A
Molecule details ›
Chain: A
Length: 484 amino acids
Theoretical weight: 53.27 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
  • Canonical: P52209 (Residues: 2-483; Coverage: 100%)
  • Best match: P52209-2 (Residues: 1-470)
Gene names: PGD, PGDH
Sequence domains:
Structure domains:

Ligands and Environments

2 bound ligands:

No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 21-ID-F
Spacegroup: P43212
Unit cell:
a: 87.246Å b: 87.246Å c: 130.424Å
α: 90° β: 90° γ: 90°
R R work R free
0.171 0.17 0.174
Expression system: Escherichia coli