PDBe 4agd

X-ray diffraction
2.81Å resolution

CRYSTAL STRUCTURE OF VEGFR2 (JUXTAMEMBRANE AND KINASE DOMAINS) IN COMPLEX WITH SUNITINIB (SU11248) (N-2-diethylaminoethyl)-5-((Z)-(5- fluoro-2-oxo-1H-indol-3-ylidene)methyl)-2,4-dimethyl-1H-pyrrole-3- carboxamide)


Function and Biology Details

Reaction catalysed:
ATP + a [protein]-L-tyrosine = ADP + a [protein]-L-tyrosine phosphate
Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
monomeric (preferred)
Entry contents:
1 distinct polypeptide molecule
Vascular endothelial growth factor receptor 2 Chain: A
Molecule details ›
Chain: A
Length: 353 amino acids
Theoretical weight: 40.26 KDa
Source organism: Homo sapiens
Expression system: Spodoptera frugiperda
  • Canonical: P35968 (Residues: 787-1171; Coverage: 25%)
Gene names: FLK1, KDR, VEGFR2
Sequence domains: Protein tyrosine kinase
Structure domains:

Ligands and Environments

1 bound ligand:

No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 21-ID-D
Spacegroup: C2
Unit cell:
a: 134.694Å b: 56.98Å c: 52.72Å
α: 90° β: 94.34° γ: 90°
R R work R free
0.21 0.21 0.307
Expression system: Spodoptera frugiperda