3vr5

X-ray diffraction
3.9Å resolution

Crystal structure of nucleotide-free Enterococcus hirae V1-ATPase [eV1(L)]

Released:

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero octamer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-155071 (preferred)
Entry contents:
4 distinct polypeptide molecules
Macromolecules (4 distinct):
V-type sodium ATPase catalytic subunit A Chains: A, B, C
V-type sodium ATPase subunit B Chains: D, E, F
Molecule details ›
Chains: D, E, F
Length: 465 amino acids
Theoretical weight: 52.42 KDa
Source organism: Enterococcus hirae
Expression system: Cell free synthesis
UniProt:
  • Canonical: Q08637 (Residues: 1-458; Coverage: 100%)
Gene names: EHR_08265, ntpB
Sequence domains:
Structure domains: Rossmann fold
V-type sodium ATPase subunit D Chain: G
Molecule details ›
Chain: G
Length: 217 amino acids
Theoretical weight: 25.59 KDa
Source organism: Enterococcus hirae
Expression system: Cell free synthesis
UniProt:
  • Canonical: P43435 (Residues: 1-210; Coverage: 100%)
Gene names: EHR_08270, ntpD
Sequence domains: ATP synthase subunit D
V-type sodium ATPase subunit G Chain: H
Molecule details ›
Chain: H
Length: 115 amino acids
Theoretical weight: 12.78 KDa
Source organism: Enterococcus hirae
Expression system: Cell free synthesis
UniProt:
  • Canonical: P43455 (Residues: 1-103; Coverage: 100%)
Gene names: EHR_08255, ntpG, ntpQ
Sequence domains: ATP synthase (F/14-kDa) subunit
Structure domains: ATPase, V1 complex, subunit F

Ligands and Environments

No bound ligands
1 modified residue:

Experiments and Validation Details

Entry percentile scores
X-ray source: PHOTON FACTORY BEAMLINE AR-NE3A
Spacegroup: P212121
Unit cell:
a: 128.33Å b: 129.32Å c: 234.53Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.209 0.207 0.25
Expression system: Cell free synthesis