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Crystal structure of D-alanine-D-alanine ligase A from Xanthomonas oryzae pathovar oryzae with ADP

Source organism: Xanthomonas oryzae pv. oryzae MAFF 311018
Biochemical function: metal ion binding
Biological process: not assigned
Cellular component: cytoplasm

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GO terms

Biochemical function:
Biological process:
  • not assigned
Cellular component:

Sequence family

InterPro InterPro annotations
IPR005905
Domain description: D-alanine--D-alanine ligase
Occurring in:
  1. D-alanine--D-alanine ligase 1
IPR000291
Domain description: D-alanine--D-alanine ligase/VANA/B/C, conserved site
Occurring in:
  1. D-alanine--D-alanine ligase 1
IPR013815
Domain description: ATP-grasp fold, subdomain 1
Occurring in:
  1. D-alanine--D-alanine ligase 1
IPR011095
Domain description: D-alanine--D-alanine ligase, C-terminal
Occurring in:
  1. D-alanine--D-alanine ligase 1
IPR011761
Domain description: ATP-grasp fold
Occurring in:
  1. D-alanine--D-alanine ligase 1
IPR011127
Domain description: D-alanine--D-alanine ligase, N-terminal domain
Occurring in:
  1. D-alanine--D-alanine ligase 1
IPR016185
Domain description: Pre-ATP-grasp domain superfamily
Occurring in:
  1. D-alanine--D-alanine ligase 1

Structure domains

CATH CATH domains
3.30.470.20
Class: Alpha Beta
Architecture: 2-Layer Sandwich
Topology: D-amino Acid Aminotransferase; Chain A, domain 1
Homology: ATP-grasp fold, B domain
Occurring in:
  1. D-alanine--D-alanine ligase 1
The deposited structure of PDB entry 3rfc contains 1 copy of CATH domain 3.30.470.20 (D-amino Acid Aminotransferase; Chain A, domain 1) in D-alanine--D-alanine ligase 1. Showing 1 copy in chain A.
3.30.1490.20
Class: Alpha Beta
Architecture: 2-Layer Sandwich
Topology: Dna Ligase; domain 1
Homology: ATP-grasp fold, A domain
Occurring in:
  1. D-alanine--D-alanine ligase 1
The deposited structure of PDB entry 3rfc contains 1 copy of CATH domain 3.30.1490.20 (Dna Ligase; domain 1) in D-alanine--D-alanine ligase 1. Showing 1 copy in chain A.
3.40.50.20
Class: Alpha Beta
Architecture: 3-Layer(aba) Sandwich
Topology: Rossmann fold
Homology: Rossmann fold
Occurring in:
  1. D-alanine--D-alanine ligase 1
The deposited structure of PDB entry 3rfc contains 1 copy of CATH domain 3.40.50.20 (Rossmann fold) in D-alanine--D-alanine ligase 1. Showing 1 copy in chain A.

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