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Crystal Structure of KijD10, a 3-ketoreductase from Actinomadura kijaniata in complex with TDP-benzene and NADP; open conformation

X-ray diffraction
1.8Å resolution
PDB entry 3rc2 coloured by chain, front view.
PDB entry 3rc2 coloured by chain, side view.
PDB entry 3rc2 coloured by chain, top view.
Source organism: Actinomadura kijaniata
Assembly composition:
monomeric (preferred)
Entry contents: 1 distinct polypeptide molecule

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Assemblies

Assembly 1 (preferred)
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Assembly Name: dTDP-3,4-didehydro-2,6-dideoxy-alpha-D-glucose 3-reductase
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Multimeric state: monomeric
Accessible surface area: 14262.28 Å2
Buried surface area: 1799.05 Å2
Dissociation area: 102.26 Å2
Dissociation energy (ΔGdiss): -2.17 kcal/mol
Dissociation entropy (TΔSdiss): -0.28 kcal/mol
Symmetry number: 1
PDBe Complex ID: PDB-CPX-109920

Macromolecules

dTDP-3,4-didehydro-2,6-dideoxy-alpha-D-glucose 3-reductase
Chain: A
Length: 350 amino acids
Theoretical weight: 39.26 KDa
Source organism: Actinomadura kijaniata
Expression system: Escherichia coli
UniProt:
  • Canonical: B3TMR8 (Residues: 1-332; Coverage: 100%)
Gene name: KijD10
Pfam:
InterPro:
CATH:
dTDP-3,4-didehydro-2,6-dideoxy-alpha-D-glucose 3-reductase in PDB entry 3rc2, assembly 1, front view.
dTDP-3,4-didehydro-2,6-dideoxy-alpha-D-glucose 3-reductase in PDB entry 3rc2, assembly 1, side view.
dTDP-3,4-didehydro-2,6-dideoxy-alpha-D-glucose 3-reductase in PDB entry 3rc2, assembly 1, top view.
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