PDBe 3r5f

X-ray diffraction
2.07Å resolution

Crystal structure of D-alanine-D-alnine ligase from Xanthomonas oryzae pv. oryzae with ATP

Entry authors: Doan TTN, Kim JK, Kang LW

Function and Biology Details

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Entry contents:
1 distinct polypeptide molecule
D-alanine--D-alanine ligase Chain: A
Molecule details ›
Chain: A
Length: 384 amino acids
Theoretical weight: 41.76 KDa
Source organism: Xanthomonas oryzae pv. oryzae KACC 10331
Expression system: Escherichia coli
  • Canonical: Q5H614 (Residues: 1-347; Coverage: 100%)
Gene names: XOO0352, ddl, ddlA
Sequence domains:
Structure domains:

Ligands and Environments

2 bound ligands:

No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: PAL/PLS BEAMLINE 4A
Spacegroup: P43212
Unit cell:
a: 83.225Å b: 83.225Å c: 97.143Å
α: 90° β: 90° γ: 90°
R R work R free
0.235 0.208 0.277
Expression system: Escherichia coli