3pg6

X-ray diffraction
1.7Å resolution

The carboxyl terminal domain of human deltex 3-like

Released:
Source organism: Homo sapiens
Primary publication:
Fold of the conserved DTC domain in Deltex proteins.
Proteins 80 1495-9 (2012)
PMID: 22411408

Function and Biology Details

Reaction catalysed:
S-ubiquitinyl-[E2 ubiquitin-conjugating enzyme]-L-cysteine + [acceptor protein]-L-lysine = [E2 ubiquitin-conjugating enzyme]-L-cysteine + N(6)-ubiquitinyl-[acceptor protein]-L-lysine
Biochemical function:
  • not assigned
Biological process:
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo dimer (preferred)
PDBe Complex ID:
PDB-CPX-186206 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
E3 ubiquitin-protein ligase DTX3L Chains: A, B, C, D
Molecule details ›
Chains: A, B, C, D
Length: 159 amino acids
Theoretical weight: 17.89 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: Q8TDB6 (Residues: 601-740; Coverage: 19%)
Gene names: BBAP, DTX3L
Sequence domains: Deltex C-terminal domain
Structure domains: Enolase-like; domain 1

Ligands and Environments

3 bound ligands:
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 23-ID-D
Spacegroup: P212121
Unit cell:
a: 75.323Å b: 76.146Å c: 138.753Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.166 0.165 0.186
Expression system: Escherichia coli BL21(DE3)