Function and Biology

Crystal structure of homodimeric R132H mutant of human cytosolic NADP(+)-dependent isocitrate dehydrogenase in complex with NADP

Source organism: Homo sapiens
Biochemical function: NAD binding
Biological process: regulation of phospholipid biosynthetic process
Cellular component: ficolin-1-rich granule lumen

EC 1.1.1.42: Isocitrate dehydrogenase (NADP(+))

Reaction catalysed:
(1a) isocitrate + NADP(+) = 2-oxalosuccinate + NADPH
Systematic name:
Isocitrate:NADP(+) oxidoreductase (decarboxylating)
Alternative Name(s):
  • Dual-cofactor-specific isocitrate dehydrogenase
  • IDH
  • IDP
  • IDP1
  • IDP2
  • IDP3
  • Isocitrate (NADP) dehydrogenase
  • Isocitrate (nicotinamide adenine dinucleotide phosphate) dehydrogenase
  • Isocitrate dehydrogenase (NADP)
  • Isocitrate dehydrogenase (NADP-dependent)
  • NADP isocitric dehydrogenase
  • NADP(+)-ICDH
  • NADP(+)-IDH
  • NADP(+)-linked isocitrate dehydrogenase
  • NADP-dependent isocitrate dehydrogenase
  • NADP-dependent isocitric dehydrogenase
  • NADP-linked isocitrate dehydrogenase
  • NADP-specific isocitrate dehydrogenase
  • Oxalosuccinate decarboxylase
  • Oxalsuccinic decarboxylase
  • Triphosphopyridine nucleotide-linked isocitrate dehydrogenase-oxalosuccinate carboxylase

Sequence family

Pfam Protein family (Pfam)
PF00180
Domain description: Isocitrate/isopropylmalate dehydrogenase
Occurring in:
  1. Isocitrate dehydrogenase [NADP] cytoplasmic
The deposited structure of PDB entry 3mar contains 2 copies of Pfam domain PF00180 (Isocitrate/isopropylmalate dehydrogenase) in Isocitrate dehydrogenase [NADP] cytoplasmic. Showing 1 copy in chain B.

InterPro InterPro annotations
IPR004790
Domain description: Isocitrate dehydrogenase NADP-dependent
Occurring in:
  1. Isocitrate dehydrogenase [NADP] cytoplasmic
IPR024084
Domain description: Isopropylmalate dehydrogenase-like domain
Occurring in:
  1. Isocitrate dehydrogenase [NADP] cytoplasmic
IPR019818
Domain description: Isocitrate/isopropylmalate dehydrogenase, conserved site
Occurring in:
  1. Isocitrate dehydrogenase [NADP] cytoplasmic

Structure domain

CATH CATH domain
3.40.718.10
Class: Alpha Beta
Architecture: 3-Layer(aba) Sandwich
Topology: Isopropylmalate Dehydrogenase
Homology: Isopropylmalate Dehydrogenase
Occurring in:
  1. Isocitrate dehydrogenase [NADP] cytoplasmic
The deposited structure of PDB entry 3mar contains 2 copies of CATH domain 3.40.718.10 (Isopropylmalate Dehydrogenase) in Isocitrate dehydrogenase [NADP] cytoplasmic. Showing 1 copy in chain B.