› 3llc

X-ray diffraction
1.8Å resolution

Crystal structure of Putative hydrolase (YP_002548124.1) from Agrobacterium vitis S4 at 1.80 A resolution

Released:
DOI: 10.2210/pdb3llc/pdb
PDB entry 3llc coloured by chain, front view.
PDB entry 3llc coloured by chain, side view.
PDB entry 3llc coloured by chain, top view.
Source organism: Agrobacterium vitis S4
Entry author: Joint Center for Structural Genomics (JCSG)

Function and Biology Details

Reactions catalysed: 
Mycophenolic acid O-acyl-glucuronide + H(2)O = mycophenolate + D-glucuronate
Palmitoyl-[protein] + H(2)O = palmitate + [protein]
Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-110837 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Palmitoyl-protein thioesterase ABHD10, mitochondrial Chain: A
Molecule details ›
Chain: A
Length: 270 amino acids
Theoretical weight: 30 KDa
Source organism: Agrobacterium vitis S4
Expression system: Escherichia coli
UniProt:
  • Canonical: B9JYM4 (Residues: 1-269; Coverage: 100%)
Gene name: Avi_0199
Sequence domains: Alpha/beta hydrolase family
Structure domains: alpha/beta hydrolase

Ligands and Environments

4 bound ligands:
Ligand CL 1 x CL
Ligand EDO 5 x EDO
Ligand PEG 1 x PEG
Ligand PG4 1 x PG4
1 modified residue:
Ligand MSE 11 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRL BEAMLINE BL9-2
Spacegroup: P41212
Unit cell:
a: 112.652Å b: 112.652Å c: 59.497Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.161 0.16 0.185
Expression system: Escherichia coli

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