PDBe 3iyn

Electron Microscopy
3.6Å resolution

3.6-Angstrom cryoEM structure of human adenovirus type 5

Released:
Source organism: Human adenovirus 5
Related structures: EMD-5172

Function and Biology Details

Structure analysis Details

Assemblies composition:
hetero 1200-mer (preferred)
hetero 20-mer
hetero 100-mer
hetero 120-mer
Entry contents:
5 distinct polypeptide molecules
Macromolecules (5 distinct):
Hexon protein Chains: A, B, C, D, E, F, G, H, I, J, K, L
Molecule details ›
Chains: A, B, C, D, E, F, G, H, I, J, K, L
Length: 952 amino acids
Theoretical weight: 108.11 KDa
Source organism: Human adenovirus 5
UniProt:
  • Canonical: P04133 (Residues: 1-952; Coverage: 100%)
Gene name: L3
Sequence domains:
Structure domains:
Penton protein Chain: M
Molecule details ›
Chain: M
Length: 571 amino acids
Theoretical weight: 63.36 KDa
Source organism: Human adenovirus 5
UniProt:
  • Canonical: P12538 (Residues: 1-571; Coverage: 100%)
Gene name: L2
Sequence domains: Adenovirus penton base protein
Structure domains:
Pre-hexon-linking protein VIII Chains: O, P
Molecule details ›
Chains: O, P
Length: 227 amino acids
Theoretical weight: 24.71 KDa
Source organism: Human adenovirus 5
UniProt:
  • Canonical: P24936 (Residues: 1-227; Coverage: 100%)
Gene name: L4
Sequence domains: Adenovirus hexon associated protein, protein VIII
Hexon-interlacing protein Chains: Q, R, S, T
Molecule details ›
Chains: Q, R, S, T
Length: 140 amino acids
Theoretical weight: 14.47 KDa
Source organism: Human adenovirus 5
UniProt:
  • Canonical: P03281 (Residues: 1-140; Coverage: 100%)
Gene name: IX
Sequence domains: Adenovirus hexon-associated protein (IX)
Pre-hexon-linking protein IIIa Chain: N
Molecule details ›
Chain: N
Length: 585 amino acids
Theoretical weight: 65.32 KDa
Source organism: Human adenovirus 5
UniProt:
  • Canonical: P12537 (Residues: 1-585; Coverage: 100%)
Gene name: L1
Sequence domains: Hexon-associated protein (IIIa)

Ligands and Environments

No bound ligands

No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 3.6Å
Relevant EMDB volumes: EMD-5172