› 3fm6

X-ray diffraction
1.13Å resolution

Crystal Structure Analysis of Fungal Versatile Peroxidase from Pleurotus eryngii

Released:
DOI: 10.2210/pdb3fm6/pdb
PDB entry 3fm6 coloured by chain, front view.
PDB entry 3fm6 coloured by chain, side view.
PDB entry 3fm6 coloured by chain, top view.
Source organism: Pleurotus eryngii
Entry authors: Piontek K, Martinez AT, Choinowski T, Plattner DA

Function and Biology Details

Reaction catalysed: 
1-(4-hydroxy-3-methoxyphenyl)-2-(2-methoxyphenoxy)propane-1,3-diol + H(2)O(2) = 4-hydroxy-3-methoxybenzaldehyde + 2-methoxyphenol + glycolaldehyde + H(2)O
Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-131734 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Versatile peroxidase VPL2 Chain: A
Molecule details ›
Chain: A
Length: 331 amino acids
Theoretical weight: 34.59 KDa
Source organism: Pleurotus eryngii
Expression system: Escherichia coli
UniProt:
  • Canonical: O94753 (Residues: 31-361; Coverage: 98%)
Gene name: vpl2
Sequence domains:
Structure domains:

Ligands and Environments


Cofactor: Ligand HEM 1 x HEM
4 bound ligands:
Ligand CA 2 x CA
Ligand ZN 5 x ZN
Ligand FE 5 x FE
Ligand GOL 2 x GOL
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SLS BEAMLINE X06SA
Spacegroup: P43
Unit cell:
a: 63.333Å b: 63.333Å c: 99.226Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.1 0.1 0.115
Expression system: Escherichia coli

Quick links