› 3ef4

X-ray diffraction
1.18Å resolution

Crystal structure of native pseudoazurin from Hyphomicrobium denitrificans

Released:
DOI: 10.2210/pdb3ef4/pdb
PDB entry 3ef4 coloured by chain, front view.
PDB entry 3ef4 coloured by chain, side view.
PDB entry 3ef4 coloured by chain, top view.
Source organism: Hyphomicrobium denitrificans
Primary publication:
Atomic resolution structure of pseudoazurin from the methylotrophic denitrifying bacterium Hyphomicrobium denitrificans: structural insights into its spectroscopic properties.
Hira D, Nojiri M, Suzuki S
Acta Crystallogr D Biol Crystallogr 65 85-92 (2009)
PMID: 19153470

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-108464 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Blue (type 1) copper domain-containing protein Chains: A, B, C
Molecule details ›
Chains: A, B, C
Length: 124 amino acids
Theoretical weight: 13.59 KDa
Source organism: Hyphomicrobium denitrificans
UniProt:
  • Canonical: A7VL37 (Residues: 27-150; Coverage: 100%)
Gene name: paz
Sequence domains: Copper binding proteins, plastocyanin/azurin family
Structure domains: Cupredoxins - blue copper proteins

Ligands and Environments

2 bound ligands:
Ligand CU 3 x CU
Ligand PO4 15 x PO4
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SPRING-8 BEAMLINE BL44XU
Spacegroup: C2
Unit cell:
a: 97.69Å b: 50.623Å c: 82.378Å
α: 90° β: 90.98° γ: 90°
R-values:
R R work R free
0.135 0.135 0.169

Quick links

Citations

5 mentions without citation

Effect of magnesium ions on the tertiary structure of the hepatitis C virus IRES and its affinity for the cyclic peptide antibiotic viomycin.
Vos et al. (2002)
4 more