PDBe 3dcv

X-ray diffraction
2.7Å resolution

Crystal structure of human Pim1 kinase complexed with 4-(4-hydroxy-3-methyl-phenyl)-6-phenylpyrimidin-2(1H)-one


Function and Biology Details

Reaction catalysed:
ATP + a protein = ADP + a phosphoprotein. 
Biochemical function:
Biological process:
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
monomeric (preferred)
Entry contents:
1 distinct polypeptide molecule
Serine/threonine-protein kinase pim-1 Chain: A
Molecule details ›
Chain: A
Length: 328 amino acids
Theoretical weight: 37.6 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli BL21
  • Canonical: P11309 (Residues: 93-404; Coverage: 77%)
  • Best match: P11309-2 (Residues: 2-313)
Gene name: PIM1
Sequence domains: Protein kinase domain
Structure domains:

Ligands and Environments

1 bound ligand:

1 modified residue:

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRL BEAMLINE BL9-2
Spacegroup: P65
Unit cell:
a: 97.59Å b: 97.59Å c: 81.258Å
α: 90° β: 90° γ: 120°
R R work R free
0.182 0.179 0.234
Expression system: Escherichia coli BL21