PDBe 3bum

X-ray diffraction
2Å resolution

Crystal structure of c-Cbl-TKB domain complexed with its binding motif in Sprouty2

Released:

Function and Biology Details

Reaction catalysed:
S-ubiquitinyl-[E2 ubiquitin-conjugating enzyme]-L-cysteine + [acceptor protein]-L-lysine = [E2 ubiquitin-conjugating enzyme]-L-cysteine + N(6)- ubiquitinyl-[acceptor protein]-L-lysine. 
Biochemical function:
Cellular component:

Structure analysis Details

Assemblies composition:
monomeric
hetero dimer (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
Protein sprouty homolog 2 Chain: A
Molecule details ›
Chain: A
Length: 13 amino acids
Theoretical weight: 1.57 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:
  • Canonical: O43597 (Residues: 49-61; Coverage: 4%)
Gene name: SPRY2
E3 ubiquitin-protein ligase CBL Chain: B
Molecule details ›
Chain: B
Length: 329 amino acids
Theoretical weight: 38.19 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:
  • Canonical: P22681 (Residues: 25-351; Coverage: 36%)
Gene names: CBL, CBL2, RNF55
Sequence domains:
Structure domains:

Ligands and Environments

No bound ligands

1 modified residue:

Experiments and Validation Details

Entry percentile scores
X-ray source: NSLS BEAMLINE X29A
Spacegroup: P6
Unit cell:
a: 122.256Å b: 122.256Å c: 54.707Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.224 0.224 0.263
Expression system: Escherichia coli