3k3q

X-ray diffraction
2.6Å resolution

Crystal Structure of a Llama Antibody complexed with the C. Botulinum Neurotoxin Serotype A Catalytic Domain

Released:

Function and Biology Details

Reaction catalysed:
Limited hydrolysis of proteins of the neuroexocytosis apparatus, synaptobrevin (also known as neuronal vesicle-associated membrane protein, VAMP), synaptosome-associated protein of 25 kDa (SNAP25) or syntaxin. No detected action on small molecule substrates.
Biochemical function:
Biological process:
Cellular component:
  • not assigned

Structure analysis Details

Assemblies composition:
hetero hexamer
hetero trimer (preferred)
PDBe Complex ID:
PDB-CPX-209623 (preferred)
Entry contents:
3 distinct polypeptide molecules
Macromolecules (3 distinct):
llama Aa1 VHH domain Chain: A
Molecule details ›
Chain: A
Length: 151 amino acids
Theoretical weight: 16.15 KDa
Source organism: Lama glama
Expression system: Escherichia coli
Structure domains: Immunoglobulins
Botulinum neurotoxin A light chain Chain: B
Molecule details ›
Chain: B
Length: 252 amino acids
Theoretical weight: 28.36 KDa
Source organism: Clostridium botulinum A str. Hall
Expression system: Escherichia coli
UniProt:
  • Canonical: P0DPI1 (Residues: 3-250; Coverage: 19%)
Gene names: CBO0806, CLC_0862, bna, botA
Sequence domains: Clostridial neurotoxin zinc protease
Structure domains: Metalloproteases ("zincins"), catalytic domain like
Botulinum neurotoxin A light chain Chain: C
Molecule details ›
Chain: C
Length: 175 amino acids
Theoretical weight: 20.62 KDa
Source organism: Clostridium botulinum A str. Hall
Expression system: Escherichia coli
UniProt:
  • Canonical: P0DPI1 (Residues: 251-425; Coverage: 14%)
Gene names: CBO0806, CLC_0862, bna, botA
Sequence domains: Clostridial neurotoxin zinc protease
Structure domains:

Ligands and Environments

1 bound ligand:
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 23-ID-B
Spacegroup: C2
Unit cell:
a: 168.282Å b: 48.764Å c: 103.643Å
α: 90° β: 116.75° γ: 90°
R-values:
R R work R free
0.218 0.218 0.256
Expression system: Escherichia coli