PDBe 3hm6

X-ray diffraction
2.4Å resolution

Crystal structure of the cytoplasmic domain of human plexin B1

Released:

Function and Biology Details

Biochemical function:
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
Plexin-B1 Chain: X
Molecule details ›
Chain: X
Length: 644 amino acids
Theoretical weight: 73.64 KDa
Source organism: Homo sapiens
Expression system: Spodoptera frugiperda
UniProt:
  • Canonical: O43157 (Residues: 1511-2135; Coverage: 30%)
Gene names: KIAA0407, PLXN5, PLXNB1, SEP
Sequence domains: Plexin cytoplasmic RasGAP domain
Structure domains:
Unknown peptide Chain: C
Molecule details ›
Chain: C
Length: 27 amino acids
Theoretical weight: 2.32 KDa
Source organism: Homo sapiens
Expression system: Spodoptera frugiperda

Ligands and Environments

1 bound ligand:

No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: NSLS BEAMLINE X25
Spacegroup: P3121
Unit cell:
a: 74.346Å b: 74.346Å c: 214.398Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.228 0.227 0.262
Expression system: Spodoptera frugiperda