Structure analysis

WT PCSK9-DELTAC BOUND TO WT EGF-A OF LDLR

X-ray diffraction
2.4Å resolution
Source organism: Homo sapiens
Assembly composition:
hetero trimer (preferred)
Entry contents: 3 distinct polypeptide molecules

Assemblies

Assembly 1 (preferred)
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Multimeric state: hetero trimer
Accessible surface area: 18295.78 Å2
Buried surface area: 3765.99 Å2
Dissociation area: 489.12 Å2
Dissociation energy (ΔGdiss): -0.4 kcal/mol
Dissociation entropy (TΔSdiss): 10.45 kcal/mol
Symmetry number: 1
PDBe Complex ID: PDB-CPX-134047
Complex Portal ID: CPX-128

Macromolecules

Chain: A
Length: 312 amino acids
Theoretical weight: 33.11 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: Q8NBP7 (Residues: 153-451; Coverage: 45%)
Gene names: NARC1, PCSK9, PSEC0052
Pfam: Subtilase family
InterPro:
CATH: Peptidase S8/S53 domain

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Chain: E
Length: 107 amino acids
Theoretical weight: 12.1 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: P01130 (Residues: 314-393; Coverage: 10%)
Gene name: LDLR
InterPro:
CATH: Laminin

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Chain: P
Length: 114 amino acids
Theoretical weight: 12.68 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: Q8NBP7 (Residues: 53-152; Coverage: 15%)
Gene names: NARC1, PCSK9, PSEC0052
Pfam: Peptidase inhibitor I9
InterPro:
CATH: Peptidase S8 propeptide/proteinase inhibitor I9

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