› 2vq0

X-ray diffraction
3.6Å resolution

Capsid structure of Sesbania mosaic virus coat protein deletion mutant rCP(delta 48 to 59)

Released:
DOI: 10.2210/pdb2vq0/pdb
PDB entry 2vq0 coloured by chain, front view.
PDB entry 2vq0 coloured by chain, side view.
PDB entry 2vq0 coloured by chain, top view.
Source organism: Sesbania mosaic virus
Primary publication:
Structure of recombinant capsids formed by the beta-annulus deletion mutant -- rCP (Delta48-59) of Sesbania mosaic virus.
Pappachan A, Subashchandrabose C, Satheshkumar PS, Savithri HS, Murthy MR
Virology 375 190-6 (2008)
PMID: 18295296

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
homo 180-mer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-190140 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Capsid protein Chains: A, B, C
Molecule details ›
Chains: A, B, C
Length: 256 amino acids
Theoretical weight: 27.58 KDa
Source organism: Sesbania mosaic virus
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: Q9EB06 (Residues: 1-268; Coverage: 96%)
Sequence domains: Viral coat protein (S domain)
Structure domains: Jelly Rolls

Ligands and Environments

1 bound ligand:
Ligand CA 3 x CA
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: RIGAKU RU200
Unit cell:
a: 288.793Å b: 288.793Å c: 288.793Å
α: 61.7° β: 61.7° γ: 61.7°
R-values:
R R work R free
0.257 0.257 0.258
Expression system: Escherichia coli BL21(DE3)

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Citations

1 review citation

Overview on Sobemoviruses and a Proposal for the Creation of the Family Sobemoviridae.
Sõmera et al. (2015)
8 other articles