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Crystal structure of the ribosome inactivating protein PDL4 from P. dioica leaves in complex with adenine

X-ray diffraction
1.24Å resolution
PDB entry 2qes coloured by chain, front view.
PDB entry 2qes coloured by chain, side view.
PDB entry 2qes coloured by chain, top view.
Source organism: Phytolacca dioica
Assembly composition:
monomeric (preferred)
Entry contents: 1 distinct polypeptide molecule

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Assemblies

Assembly 1 (preferred)
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Assembly Name: Ribosome-inactivating protein PD-L3/PD-L4
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Multimeric state: monomeric
Accessible surface area: 11494.25 Å2
Buried surface area: 349.66 Å2
Dissociation area: 174.83 Å2
Dissociation energy (ΔGdiss): -4.89 kcal/mol
Dissociation entropy (TΔSdiss): 1.82 kcal/mol
Symmetry number: 1
PDBe Complex ID: PDB-CPX-160919

Macromolecules

Ribosome-inactivating protein PD-L3/PD-L4
Chain: A
Length: 261 amino acids
Theoretical weight: 29.22 KDa
Source organism: Phytolacca dioica
UniProt:
  • Canonical: P84854 (Residues: 1-261; Coverage: 100%)
Pfam: Ribosome inactivating protein
InterPro:
CATH:
Ribosome-inactivating protein PD-L3/PD-L4 in PDB entry 2qes, assembly 1, front view.
Ribosome-inactivating protein PD-L3/PD-L4 in PDB entry 2qes, assembly 1, side view.
Ribosome-inactivating protein PD-L3/PD-L4 in PDB entry 2qes, assembly 1, top view.
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