2q9g Citations

Crystal structures of substrate-bound and substrate-free cytochrome P450 46A1, the principal cholesterol hydroxylase in the brain.

Proc Natl Acad Sci U S A 105 9546-51 (2008)
Cited: 63 times
EuropePMC logo PMID: 18621681

Abstract

By converting cholesterol to 24S-hydroxycholesterol, cytochrome P450 46A1 (CYP46A1) initiates the major pathway for cholesterol removal from the brain. Two crystal structures of CYP46A1 were determined. First is the 1.9-A structure of CYP46A1 complexed with a high-affinity substrate cholesterol 3-sulfate (CH-3S). The second structure is that of the substrate-free CYP46A1 at 2.4-A resolution. CH-3S is bound in the productive orientation and occupies the entire length of the banana-shaped hydrophobic active-site cavity. A unique helix B'-C loop insertion (residues 116-120) contributes to positioning cholesterol for oxygenation catalyzed by CYP46A1. A comparison with the substrate-free structure reveals substantial substrate-induced conformational changes in CYP46A1 and suggests that structurally distinct compounds could bind in the enzyme active site. In vitro assays were performed to characterize the effect of different therapeutic agents on cholesterol hydroxylase activity of purified full-length recombinant CYP46A1, and several strong inhibitors and modest coactivators of CYP46A1 were identified. Structural and biochemical data provide evidence that CYP46A1 activity could be altered by exposure to some therapeutic drugs and potentially other xenobiotics.

Reviews - 2q9g mentioned but not cited (1)

  1. Conformational plasticity and structure/function relationships in cytochromes P450. Pochapsky TC, Kazanis S, Dang M. Antioxid Redox Signal 13 1273-1296 (2010)

Articles - 2q9g mentioned but not cited (7)

  1. Crystal structures of substrate-bound and substrate-free cytochrome P450 46A1, the principal cholesterol hydroxylase in the brain. Mast N, White MA, Bjorkhem I, Bjorkhem I, Johnson EF, Stout CD, Pikuleva IA. Proc Natl Acad Sci U S A 105 9546-9551 (2008)
  2. Structural basis of drug binding to CYP46A1, an enzyme that controls cholesterol turnover in the brain. Mast N, Charvet C, Pikuleva IA, Stout CD. J Biol Chem 285 31783-31795 (2010)
  3. In vitro cytochrome P450 46A1 (CYP46A1) activation by neuroactive compounds. Mast N, Anderson KW, Johnson KM, Phan TTN, Guengerich FP, Pikuleva IA. J Biol Chem 292 12934-12946 (2017)
  4. Binding of a cyano- and fluoro-containing drug bicalutamide to cytochrome P450 46A1: unusual features and spectral response. Mast N, Zheng W, Stout CD, Pikuleva IA. J Biol Chem 288 4613-4624 (2013)
  5. Use of complementary cation and anion heavy-atom salt derivatives to solve the structure of cytochrome P450 46A1. White MA, Mast N, Bjorkhem I, Bjorkhem I, Johnson EF, Stout CD, Pikuleva IA. Acta Crystallogr D Biol Crystallogr 64 487-495 (2008)
  6. In Vitro Activation of Cytochrome P450 46A1 (CYP46A1) by Efavirenz-Related Compounds. Mast N, Verwilst P, Wilkey CJ, Guengerich FP, Pikuleva IA. J Med Chem 63 6477-6488 (2020)
  7. Identification of potential inhibitors of brain-specific CYP46A1 from phytoconstituents in Indian traditional medicinal plants. Kaur K, Devi B, Agrawal V, Kumar R, Sandhir R. J Proteins Proteom 13 227-245 (2022)


Reviews citing this publication (14)

  1. Cholesterol 24-hydroxylase: an enzyme of cholesterol turnover in the brain. Russell DW, Halford RW, Ramirez DM, Shah R, Kotti T. Annu Rev Biochem 78 1017-1040 (2009)
  2. New insights into the structural characteristics and functional relevance of the human cytochrome P450 2D6 enzyme. Wang B, Yang LP, Zhang XZ, Huang SQ, Bartlam M, Zhou SF. Drug Metab Rev 41 573-643 (2009)
  3. Involvement of oxysterols in age-related diseases and ageing processes. Zarrouk A, Vejux A, Mackrill J, O'Callaghan Y, Hammami M, O'Brien N, Lizard G. Ageing Res Rev 18 148-162 (2014)
  4. Structural diversity of eukaryotic membrane cytochrome p450s. Johnson EF, Stout CD. J Biol Chem 288 17082-17090 (2013)
  5. A novel type of allosteric regulation: functional cooperativity in monomeric proteins. Denisov IG, Sligar SG. Arch Biochem Biophys 519 91-102 (2012)
  6. Conformational diversity and ligand tunnels of mammalian cytochrome P450s. Yu X, Cojocaru V, Wade RC. Biotechnol Appl Biochem 60 134-145 (2013)
  7. Cholesterol 24-Hydroxylation by CYP46A1: Benefits of Modulation for Brain Diseases. Petrov AM, Pikuleva IA. Neurotherapeutics 16 635-648 (2019)
  8. Cholesterol, an essential molecule: diverse roles involving cytochrome P450 enzymes. McLean KJ, Hans M, Munro AW. Biochem Soc Trans 40 587-593 (2012)
  9. Cholesterol-metabolizing cytochromes P450: implications for cholesterol lowering. Pikuleva IA. Expert Opin Drug Metab Toxicol 4 1403-1414 (2008)
  10. Regulation of Human Cytochrome P4501A1 (hCYP1A1): A Plausible Target for Chemoprevention? Santes-Palacios R, Ornelas-Ayala D, Cabañas N, Marroquín-Pérez A, Hernández-Magaña A, Del Rosario Olguín-Reyes S, Camacho-Carranza R, Espinosa-Aguirre JJ. Biomed Res Int 2016 5341081 (2016)
  11. Cholesterol Hydroxylating Cytochrome P450 46A1: From Mechanisms of Action to Clinical Applications. Pikuleva IA, Cartier N. Front Aging Neurosci 13 696778 (2021)
  12. Common structural features of cholesterol binding sites in crystallized soluble proteins. Bukiya AN, Dopico AM. J Lipid Res 58 1044-1054 (2017)
  13. Human cytochrome P450 enzymes 5-51 as targets of drugs and natural and environmental compounds: mechanisms, induction, and inhibition - toxic effects and benefits. Rendic SP, Peter Guengerich F. Drug Metab Rev 50 256-342 (2018)
  14. Challenges in assignment of allosteric effects in cytochrome P450-catalyzed substrate oxidations to structural dynamics in the hemoprotein architecture. Hlavica P. J Inorg Biochem 167 100-115 (2017)

Articles citing this publication (41)

  1. Identification and developmental expression of the full complement of Cytochrome P450 genes in Zebrafish. Goldstone JV, McArthur AG, Kubota A, Zanette J, Parente T, Jönsson ME, Nelson DR, Stegeman JJ. BMC Genomics 11 643 (2010)
  2. Structures of cytochrome P450 17A1 with prostate cancer drugs abiraterone and TOK-001. DeVore NM, Scott EE. Nature 482 116-119 (2012)
  3. Human cytochrome P450 1A1 structure and utility in understanding drug and xenobiotic metabolism. Walsh AA, Szklarz GD, Scott EE. J Biol Chem 288 12932-12943 (2013)
  4. Crystal structure of CYP24A1, a mitochondrial cytochrome P450 involved in vitamin D metabolism. Annalora AJ, Goodin DB, Hong WX, Zhang Q, Johnson EF, Stout CD. J Mol Biol 396 441-451 (2010)
  5. Crystal structures of Trypanosoma brucei sterol 14alpha-demethylase and implications for selective treatment of human infections. Lepesheva GI, Park HW, Hargrove TY, Vanhollebeke B, Wawrzak Z, Harp JM, Sundaramoorthy M, Nes WD, Pays E, Chaudhuri M, Villalta F, Waterman MR. J Biol Chem 285 1773-1780 (2010)
  6. The Structure of Mycobacterium tuberculosis CYP125: molecular basis for cholesterol binding in a P450 needed for host infection. McLean KJ, Lafite P, Levy C, Cheesman MR, Mast N, Pikuleva IA, Leys D, Munro AW. J Biol Chem 284 35524-35533 (2009)
  7. Azole binding properties of Candida albicans sterol 14-alpha demethylase (CaCYP51). Warrilow AG, Martel CM, Parker JE, Melo N, Lamb DC, Nes WD, Kelly DE, Kelly SL. Antimicrob Agents Chemother 54 4235-4245 (2010)
  8. Structural basis for three-step sequential catalysis by the cholesterol side chain cleavage enzyme CYP11A1. Mast N, Annalora AJ, Lodowski DT, Palczewski K, Stout CD, Pikuleva IA. J Biol Chem 286 5607-5613 (2011)
  9. Crystal structure of human cytochrome P450 2D6 with prinomastat bound. Wang A, Savas U, Hsu MH, Stout CD, Johnson EF. J Biol Chem 287 10834-10843 (2012)
  10. Structural complex of sterol 14α-demethylase (CYP51) with 14α-methylenecyclopropyl-Delta7-24, 25-dihydrolanosterol. Hargrove TY, Wawrzak Z, Liu J, Waterman MR, Nes WD, Lepesheva GI. J Lipid Res 53 311-320 (2012)
  11. Crystal structure of H2O2-dependent cytochrome P450SPalpha with its bound fatty acid substrate: insight into the regioselective hydroxylation of fatty acids at the alpha position. Fujishiro T, Shoji O, Nagano S, Sugimoto H, Shiro Y, Watanabe Y. J Biol Chem 286 29941-29950 (2011)
  12. Pharmacologic stimulation of cytochrome P450 46A1 and cerebral cholesterol turnover in mice. Mast N, Li Y, Linger M, Clark M, Clark M, Wiseman J, Pikuleva IA. J Biol Chem 289 3529-3538 (2014)
  13. The antifungal drug voriconazole is an efficient inhibitor of brain cholesterol 24S-hydroxylase in vitro and in vivo. Shafaati M, Mast N, Beck O, Nayef R, Heo GY, Björkhem-Bergman L, Lütjohann D, Björkhem I, Björkhem I, Pikuleva IA. J Lipid Res 51 318-323 (2010)
  14. Detection of substrate-dependent conformational changes in the P450 fold by nuclear magnetic resonance. Colthart AM, Tietz DR, Ni Y, Friedman JL, Dang M, Pochapsky TC. Sci Rep 6 22035 (2016)
  15. Antifungal Azoles: Structural Insights into Undesired Tight Binding to Cholesterol-Metabolizing CYP46A1. Mast N, Zheng W, Stout CD, Pikuleva IA. Mol Pharmacol 84 86-94 (2013)
  16. Mapping of the Allosteric Site in Cholesterol Hydroxylase CYP46A1 for Efavirenz, a Drug That Stimulates Enzyme Activity. Anderson KW, Mast N, Hudgens JW, Lin JB, Turko IV, Pikuleva IA. J Biol Chem 291 11876-11886 (2016)
  17. Marketed Drugs Can Inhibit Cytochrome P450 27A1, a Potential New Target for Breast Cancer Adjuvant Therapy. Mast N, Lin JB, Pikuleva IA. Mol Pharmacol 88 428-436 (2015)
  18. Nanodiscs in the studies of membrane-bound cytochrome P450 enzymes. Luthra A, Gregory M, Grinkova YV, Denisov IG, Sligar SG. Methods Mol Biol 987 115-127 (2013)
  19. Therapeutic implications of altered cholesterol homeostasis mediated by loss of CYP46A1 in human glioblastoma. Han M, Wang S, Yang N, Wang X, Zhao W, Saed HS, Daubon T, Huang B, Chen A, Li G, Miletic H, Thorsen F, Bjerkvig R, Li X, Wang J. EMBO Mol Med 12 e10924 (2020)
  20. Conformational selection dominates binding of steroids to human cytochrome P450 17A1. Guengerich FP, Wilkey CJ, Glass SM, Reddish MJ. J Biol Chem 294 10028-10041 (2019)
  21. Combined use of mass spectrometry and heterologous expression for identification of membrane-interacting peptides in cytochrome P450 46A1 and NADPH-cytochrome P450 oxidoreductase. Mast N, Liao WL, Pikuleva IA, Turko IV. Arch Biochem Biophys 483 81-89 (2009)
  22. Fungal cytochrome P450 monooxygenases of Fusarium oxysporum for the synthesis of ω-hydroxy fatty acids in engineered Saccharomyces cerevisiae. Durairaj P, Malla S, Nadarajan SP, Lee PG, Jung E, Park HH, Kim BG, Yun H. Microb Cell Fact 14 45 (2015)
  23. In silico and intuitive predictions of CYP46A1 inhibition by marketed drugs with subsequent enzyme crystallization in complex with fluvoxamine. Mast N, Linger M, Clark M, Clark M, Wiseman J, Stout CD, Pikuleva IA. Mol Pharmacol 82 824-834 (2012)
  24. A Minimal Functional Complex of Cytochrome P450 and FBD of Cytochrome P450 Reductase in Nanodiscs. Prade E, Mahajan M, Im SC, Zhang M, Gentry KA, Anantharamaiah GM, Waskell L, Ramamoorthy A. Angew Chem Int Ed Engl 57 8458-8462 (2018)
  25. The use of isomeric testosterone dimers to explore allosteric effects in substrate binding to cytochrome P450 CYP3A4. Denisov IG, Mak PJ, Grinkova YV, Bastien D, Bérubé G, Sligar SG, Kincaid JR. J Inorg Biochem 158 77-85 (2016)
  26. Oral administration of repurposed drug targeting Cyp46A1 increases survival times of prion infected mice. Ali T, Hannaoui S, Nemani S, Tahir W, Zemlyankina I, Cherry P, Shim SY, Sim V, Schaetzl HM, Gilch S. Acta Neuropathol Commun 9 58 (2021)
  27. Steroid and protein ligand binding to cytochrome P450 46A1 as assessed by hydrogen-deuterium exchange and mass spectrometry. Liao WL, Dodder NG, Mast N, Pikuleva IA, Turko IV. Biochemistry 48 4150-4158 (2009)
  28. Binding of a physiological substrate causes large-scale conformational reorganization in cytochrome P450 51. Hargrove TY, Wawrzak Z, Fisher PM, Child SA, Nes WD, Guengerich FP, Waterman MR, Lepesheva GI. J Biol Chem 293 19344-19353 (2018)
  29. P450cin active site water: implications for substrate binding and solvent accessibility. Madrona Y, Hollingsworth SA, Khan B, Poulos TL. Biochemistry 52 5039-5050 (2013)
  30. A new insight into the role of rat cytochrome P450 24A1 in metabolism of selective analogs of 1α,25-dihydroxyvitamin D₃. Rhieu SY, Annalora AJ, Gathungu RM, Vouros P, Uskokovic MR, Schuster I, Palmore GT, Reddy GS. Arch Biochem Biophys 509 33-43 (2011)
  31. CYPome of the conifer pathogen Heterobasidion irregulare: Inventory, phylogeny, and transcriptional analysis of the response to biocontrol. Mgbeahuruike AC, Kovalchuk A, Ubhayasekera W, Nelson DR, Yadav JS. Fungal Biol 121 158-171 (2017)
  32. Inhibition and stimulation of activity of purified recombinant CYP11A1 by therapeutic agents. Mast N, Linger M, Pikuleva IA. Mol Cell Endocrinol 371 100-106 (2013)
  33. Structural basis of cholesterol binding by a novel clade of dendritic cell modulators from ticks. Roversi P, Johnson S, Preston SG, Nunn MA, Paesen GC, Austyn JM, Nuttall PA, Lea SM. Sci Rep 7 16057 (2017)
  34. Structural variation during dog domestication: insights from gray wolf and dhole genomes. Wang GD, Shao XJ, Bai B, Wang J, Wang X, Cao X, Liu YH, Wang X, Yin TT, Zhang SJ, Lu Y, Wang Z, Wang L, Zhao W, Zhang B, Ruan J, Zhang YP. Natl Sci Rev 6 110-122 (2019)
  35. N,N-Dimethyl-3β-hydroxycholenamide Reduces Retinal Cholesterol via Partial Inhibition of Retinal Cholesterol Biosynthesis Rather Than its Liver X Receptor Transcriptional Activity. El-Darzi N, Astafev A, Mast N, Saadane A, Lam M, Pikuleva IA. Front Pharmacol 9 827 (2018)
  36. Cholesterol hydroperoxides as substrates for cholesterol-metabolizing cytochrome P450 enzymes and alternative sources of 25-hydroxycholesterol and other oxysterols. van Lier JE, Mast N, Pikuleva IA. Angew Chem Int Ed Engl 54 11138-11142 (2015)
  37. Synthesis and pharmacokinetic study of a 11C-labeled cholesterol 24-hydroxylase inhibitor using 'in-loop' [11C]CO2 fixation method. Chen Z, Chen J, Mast N, Rong J, Deng X, Shao T, Fu H, Yu Q, Sun J, Shao Y, Josephson L, Collier TL, Pikuleva I, Liang SH. Bioorg Med Chem Lett 30 127068 (2020)
  38. Assessment of cholesterol homeostasis in the living human brain. Haider A, Zhao C, Wang L, Xiao Z, Rong J, Xia X, Chen Z, Pfister SK, Mast N, Yutuc E, Chen J, Li Y, Shao T, Warnock GI, Dawoud A, Connors TR, Oakley DH, Wei H, Wang J, Zheng Z, Xu H, Davenport AT, Daunais JB, Van RS, Shao Y, Wang Y, Zhang MR, Gebhard C, Pikuleva I, Levey AI, Griffiths WJ, Liang SH. Sci Transl Med 14 eadc9967 (2022)
  39. Brain Cholesterol Biosynthetic Pathway Is Altered in a Preclinical Model of Fragile X Syndrome. Parente M, Tonini C, Buzzelli V, Carbone E, Trezza V, Pallottini V. Int J Mol Sci 23 3408 (2022)
  40. Identification of 74 cytochrome P450 genes and co-localized cytochrome P450 genes of the CYP2K, CYP5A, and CYP46A subfamilies in the mangrove killifish Kryptolebias marmoratus. Lee BY, Kim DH, Kim HS, Kim BM, Han J, Lee JS. BMC Genomics 19 7 (2018)
  41. Imidazo[1,2-a]pyridines as cholesterol 24-hydroxylase (CYP46A1) inhibitors: a patent evaluation (WO2014061676). Uto Y. Expert Opin Ther Pat 25 373-377 (2015)


Related citations provided by authors (1)

  1. Use of complementary cation and anion heavy-atom salt derivatives to solve the structure of cytochrome P450 46A1.. White MA, Mast N, Bjorkhem I, Johnson EF, Stout CD, Pikuleva IA Acta Crystallogr D Biol Crystallogr 64 487-95 (2008)