PDBe 2pz0

X-ray diffraction
1.91Å resolution

Crystal structure of Glycerophosphodiester Phosphodiesterase (GDPD) from T. tengcongensis


Function and Biology Details

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Entry contents:
1 distinct polypeptide molecule
Glycerophosphoryl diester phosphodiesterase Chains: A, B
Molecule details ›
Chains: A, B
Length: 252 amino acids
Theoretical weight: 28.78 KDa
Source organism: Caldanaerobacter subterraneus subsp. tengcongensis MB4
Expression system: Escherichia coli
  • Canonical: Q8RB32 (Residues: 1-243; Coverage: 100%)
Gene names: TTE0993, UgpQ
Sequence domains: Glycerophosphoryl diester phosphodiesterase family
Structure domains: Phosphatidylinositol (PI) phosphodiesterase

Ligands and Environments

2 bound ligands:

No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: RIGAKU
Spacegroup: P21
Unit cell:
a: 49.401Å b: 53.608Å c: 110.885Å
α: 90° β: 97.91° γ: 90°
R R work R free
0.229 0.229 0.236
Expression system: Escherichia coli