PDBe 1wpq

X-ray diffraction
2.5Å resolution

Ternary Complex Of Glycerol 3-phosphate Dehydrogenase 1 with NAD and dihydroxyactone

Source organism: Homo sapiens
Primary publication:
Crystal structures of human glycerol 3-phosphate dehydrogenase 1 (GPD1).
J. Mol. Biol. 357 858-69 (2006)
PMID: 16460752

Function and Biology Details

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Entry contents:
1 distinct polypeptide molecule
Glycerol-3-phosphate dehydrogenase [NAD(+)], cytoplasmic Chains: A, B
Molecule details ›
Chains: A, B
Length: 349 amino acids
Theoretical weight: 37.63 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
  • Canonical: P21695 (Residues: 1-349; Coverage: 100%)
Gene name: GPD1
Sequence domains:
Structure domains:

Ligands and Environments

Cofactor: Ligand NAD 2 x NAD
2 bound ligands:

No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: RIGAKU RU200
Spacegroup: P43212
Unit cell:
a: 115.995Å b: 115.995Å c: 153.72Å
α: 90° β: 90° γ: 90°
R R work R free
0.267 0.258 0.294
Expression system: Escherichia coli