1tzi

X-ray diffraction
2.8Å resolution

Crystal Structure of the Fab YADS2 Complexed with h-VEGF

Released:
Source organisms:

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero hexamer (preferred)
PDBe Complex ID:
PDB-CPX-210644 (preferred)
Entry contents:
3 distinct polypeptide molecules
Macromolecules (3 distinct):
Fab YADS2 Light Chain Chain: A
Molecule details ›
Chain: A
Length: 214 amino acids
Theoretical weight: 23.39 KDa
Source organism: Mus musculus
Expression system: Escherichia coli
Structure domains: Immunoglobulins
Fab YADS2 Heavy Chain Chain: B
Molecule details ›
Chain: B
Length: 222 amino acids
Theoretical weight: 23.38 KDa
Source organism: Mus musculus
Expression system: Escherichia coli
Structure domains: Immunoglobulins
N-VEGF Chain: V
Molecule details ›
Chain: V
Length: 102 amino acids
Theoretical weight: 11.95 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:
  • Canonical: P15692 (Residues: 214-315; Coverage: 26%)
Gene names: VEGF, VEGFA
Sequence domains: VEGF heparin-binding domain
Structure domains: Cystine-knot cytokines

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRL BEAMLINE BL9-2
Spacegroup: C2221
Unit cell:
a: 96.504Å b: 149.588Å c: 117.421Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.22 0.218 0.254
Expression system: Escherichia coli