1tcy Citations

Dissection of the functional role of structural elements of tyrosine-63 in the catalytic action of human lysozyme.

Biochemistry 31 9212-9 (1992)
Related entries: 1tay, 1tby, 1tdy

Cited: 12 times
EuropePMC logo PMID: 1390708

Abstract

The functional role of tyrosine-63 in the catalytic action of human lysozyme (EC 3.2.1.17) has been probed by site-directed mutagenesis. In order to identify the role of Tyr63 in the interaction with substrate, both the three-dimensional structures and the enzymatic functions of the mutants, in which Tyr63 was converted to phenylalanine, tryptophan, leucine, or alanine, have been characterized in comparison with those of the wild-type enzyme. X-ray crystallographical analysis of the mutant enzyme at not less than 1.77-A resolution indicated no remarkable change in tertiary structure except the side chain of 63rd residue. The conversion of Tyr63 to Phe or Trp did not change the enzymatic properties against the noncharged substrate (or substrate analogs) largely, while the conversion to Leu or Ala markedly reduced the catalytic activity to a few percent of wild-type enzyme. Kinetic analysis using p-nitrophenyl penta-N-acetyl-beta-(1----4)-chitopentaoside (PNP-(GlcNAc)5) as a substrate revealed that the reduction of activity should mainly be attributed to the reduction of affinity between enzyme and substrate. The apparent contribution of the phenolic hydroxyl group and the phenol group in the side chain of Tyr63 was estimated to 0.4 +/- 0.4 and 2.5 +/- 0.8 kcal mol-1, respectively. The result suggested that the direct contact between the planar side-chain group of Tyr63 and the sugar residue at subsite B is a major determinant of binding specificity toward a electrostatically neutral substrate in the catalytic action of human lysozyme.

Articles citing this publication (12)

  1. The 3D profile method for identifying fibril-forming segments of proteins. Thompson MJ, Sievers SA, Karanicolas J, Ivanova MI, Baker D, Eisenberg D. Proc. Natl. Acad. Sci. U.S.A. 103 4074-4078 (2006)
  2. Three-dimensional structure analysis of PROSITE patterns. Kasuya A, Thornton JM. J. Mol. Biol. 286 1673-1691 (1999)
  3. Enhanced toxicity of Bacillus thuringiensis Cry3A delta-endotoxin in coleopterans by mutagenesis in a receptor binding loop. Wu SJ, Koller CN, Miller DL, Bauer LS, Dean DH. FEBS Lett. 473 227-232 (2000)
  4. Structural relationships in the lysozyme superfamily: significant evidence for glycoside hydrolase signature motifs. Wohlkönig A, Huet J, Looze Y, Wintjens R. PLoS ONE 5 e15388 (2010)
  5. Analysis of the internal motion of free and ligand-bound human lysozyme by use of 15N NMR relaxation measurement: a comparison with those of hen lysozyme. Mine S, Ueda T, Hashimoto Y, Imoto T. Protein Sci. 9 1669-1684 (2000)
  6. A novel C-type lysozyme from Mytilus galloprovincialis: insight into innate immunity and molecular evolution of invertebrate C-type lysozymes. Wang Q, Wang C, Mu C, Wu H, Zhang L, Zhao J. PLoS ONE 8 e67469 (2013)
  7. Thermal stability and enzymatic activity of a smaller lysozyme from silk moth (Bombyx mori). Masaki K, Aizawa T, Koganesawa N, Nimori T, Bando H, Kawano K, Nitta K. J Protein Chem 20 107-113 (2001)
  8. Alteration of the substrate specificity of human lysozyme by site-specific intermolecular cross-linking. Muraki M, Jigami Y, Harata K. FEBS Lett. 355 271-274 (1994)
  9. Characterization of functionally important sites in the bacteriophage Mu transposase protein. Ulycznyj PI, Forghani F, DuBow MS. Mol. Gen. Genet. 242 272-279 (1994)
  10. Sweetness characterization of recombinant human lysozyme. Matano M, Nakajima K, Kashiwagi Y, Udaka S, Maehashi K. Comp. Biochem. Physiol. B, Biochem. Mol. Biol. 188 8-14 (2015)
  11. Journal club as a supplement to the undergraduate biochemistry laboratory. Hall ML, Wolfson AJ. Biochem. Educ. 28 71-73 (2000)
  12. Molecular characterization, expression and antimicrobial activities of two c-type lysozymes from manila clam Venerupis philippinarum. Yang D, Wang Q, Cao R, Chen L, Liu Y, Cong M, Wu H, Li F, Ji C, Zhao J. Dev. Comp. Immunol. 73 109-118 (2017)